Barium in PDB 9h7z: Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions
Enzymatic activity of Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions
All present enzymatic activity of Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions:
1.1.3.4;
Protein crystallography data
The structure of Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions, PDB code: 9h7z
was solved by
J.A.Bauer,
V.Bauerova,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
37.95 /
1.71
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
85.219,
82.251,
103.3,
90,
106.27,
90
|
|
R / Rfree (%)
|
17.7 /
19.9
|
Other elements in 9h7z:
The structure of Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions also contains other interesting chemical elements:
Barium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Barium atom in the Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions
(pdb code 9h7z). This binding sites where shown within
5.0 Angstroms radius around Barium atom.
In total 12 binding sites of Barium where determined in the
Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions, PDB code: 9h7z:
Jump to Barium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Barium binding site 1 out
of 12 in 9h7z
Go back to
Barium Binding Sites List in 9h7z
Barium binding site 1 out
of 12 in the Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions
 Mono view
 Stereo pair view
|
|
A full contact list of Barium with other atoms in the Ba binding
site number 1 of Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ba618
b:31.1
occ:0.29
|
H
|
A:VAL560
|
2.5
|
33.1
|
1.0
|
|
HA
|
A:HIS559
|
2.6
|
36.0
|
1.0
|
|
HG22
|
A:VAL560
|
2.8
|
33.2
|
1.0
|
|
CE1
|
A:HIS516
|
2.8
|
37.1
|
1.0
|
|
HE1
|
A:HIS516
|
2.9
|
44.6
|
1.0
|
|
NE2
|
A:HIS516
|
3.1
|
36.9
|
1.0
|
|
N1
|
A:FAD606
|
3.1
|
25.1
|
1.0
|
|
ND1
|
A:HIS516
|
3.2
|
38.4
|
1.0
|
|
HB3
|
A:HIS559
|
3.3
|
33.9
|
1.0
|
|
N
|
A:VAL560
|
3.3
|
27.5
|
1.0
|
|
C10
|
A:FAD606
|
3.3
|
25.7
|
1.0
|
|
HE2
|
A:HIS516
|
3.4
|
44.3
|
1.0
|
|
CA
|
A:HIS559
|
3.4
|
29.9
|
1.0
|
|
C2
|
A:FAD606
|
3.4
|
27.0
|
1.0
|
|
H1'1
|
A:FAD606
|
3.5
|
30.6
|
1.0
|
|
HG13
|
A:VAL560
|
3.5
|
38.1
|
1.0
|
|
ND1
|
A:HIS559
|
3.6
|
28.8
|
1.0
|
|
CD2
|
A:HIS516
|
3.7
|
34.7
|
1.0
|
|
CB
|
A:HIS559
|
3.7
|
28.2
|
1.0
|
|
CG
|
A:HIS516
|
3.7
|
34.8
|
1.0
|
|
CG2
|
A:VAL560
|
3.8
|
27.6
|
1.0
|
|
C4X
|
A:FAD606
|
3.8
|
27.5
|
1.0
|
|
N10
|
A:FAD606
|
3.8
|
25.6
|
1.0
|
|
C
|
A:HIS559
|
3.9
|
29.0
|
1.0
|
|
N3
|
A:FAD606
|
3.9
|
25.8
|
1.0
|
|
O2
|
A:FAD606
|
4.0
|
27.0
|
1.0
|
|
CG
|
A:HIS559
|
4.0
|
28.8
|
1.0
|
|
C4
|
A:FAD606
|
4.1
|
26.3
|
1.0
|
|
C1'
|
A:FAD606
|
4.1
|
25.4
|
1.0
|
|
HG21
|
A:VAL560
|
4.3
|
33.2
|
1.0
|
|
CG1
|
A:VAL560
|
4.3
|
31.7
|
1.0
|
|
HD2
|
A:HIS516
|
4.3
|
41.8
|
1.0
|
|
HG23
|
A:VAL560
|
4.3
|
33.2
|
1.0
|
|
H1'2
|
A:FAD606
|
4.3
|
30.6
|
1.0
|
|
CB
|
A:VAL560
|
4.4
|
28.8
|
1.0
|
|
HN3
|
A:FAD606
|
4.4
|
31.1
|
1.0
|
|
O
|
A:HOH869
|
4.4
|
35.4
|
1.0
|
|
CA
|
A:VAL560
|
4.4
|
28.8
|
1.0
|
|
N5
|
A:FAD606
|
4.6
|
27.3
|
1.0
|
|
O
|
A:SER558
|
4.6
|
30.2
|
1.0
|
|
C9A
|
A:FAD606
|
4.6
|
26.0
|
1.0
|
|
HB3
|
A:HIS516
|
4.6
|
38.6
|
1.0
|
|
HB2
|
A:HIS559
|
4.6
|
33.9
|
1.0
|
|
N
|
A:HIS559
|
4.6
|
28.0
|
1.0
|
|
H
|
A:MET561
|
4.7
|
31.1
|
1.0
|
|
HG11
|
A:VAL560
|
4.7
|
38.1
|
1.0
|
|
CE1
|
A:HIS559
|
4.7
|
30.1
|
1.0
|
|
O
|
A:HOH859
|
4.7
|
30.0
|
1.0
|
|
CB
|
A:HIS516
|
4.8
|
32.0
|
1.0
|
|
O
|
A:HOH943
|
4.8
|
32.4
|
1.0
|
|
C5X
|
A:FAD606
|
4.9
|
26.8
|
1.0
|
|
O4
|
A:FAD606
|
5.0
|
29.2
|
1.0
|
|
HG12
|
A:VAL560
|
5.0
|
38.1
|
1.0
|
|
Barium binding site 2 out
of 12 in 9h7z
Go back to
Barium Binding Sites List in 9h7z
Barium binding site 2 out
of 12 in the Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions
 Mono view
 Stereo pair view
|
|
A full contact list of Barium with other atoms in the Ba binding
site number 2 of Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ba619
b:34.7
occ:0.33
|
H
|
A:GLY346
|
2.4
|
41.3
|
1.0
|
|
O
|
A:HOH851
|
3.1
|
33.3
|
1.0
|
|
O
|
A:HOH774
|
3.2
|
34.5
|
1.0
|
|
HB2
|
A:GLN345
|
3.2
|
43.6
|
1.0
|
|
N
|
A:GLY346
|
3.3
|
34.3
|
1.0
|
|
HD2
|
A:ARG176
|
3.5
|
38.0
|
1.0
|
|
HG3
|
A:GLN347
|
3.5
|
36.8
|
1.0
|
|
HB2
|
A:ALA418
|
3.5
|
48.3
|
1.0
|
|
HH11
|
A:ARG176
|
3.6
|
37.0
|
1.0
|
|
HA
|
A:GLN345
|
3.7
|
42.8
|
1.0
|
|
CB
|
A:GLN345
|
4.0
|
36.3
|
1.0
|
|
CA
|
A:GLY346
|
4.0
|
33.0
|
1.0
|
|
OD1
|
A:ASN66
|
4.1
|
31.2
|
1.0
|
|
HD3
|
A:ARG176
|
4.1
|
38.0
|
1.0
|
|
C
|
A:GLY346
|
4.1
|
33.2
|
1.0
|
|
HA2
|
A:GLY346
|
4.1
|
39.8
|
1.0
|
|
CA
|
A:GLN345
|
4.1
|
35.6
|
1.0
|
|
HG2
|
A:GLN347
|
4.2
|
36.8
|
1.0
|
|
O
|
A:GLY346
|
4.2
|
33.2
|
1.0
|
|
C
|
A:GLN345
|
4.2
|
35.8
|
1.0
|
|
CD
|
A:ARG176
|
4.2
|
31.6
|
1.0
|
|
CG
|
A:GLN347
|
4.2
|
30.6
|
1.0
|
|
NH1
|
A:ARG176
|
4.3
|
30.7
|
1.0
|
|
HB3
|
A:GLN345
|
4.4
|
43.6
|
1.0
|
|
CB
|
A:ALA418
|
4.5
|
40.2
|
1.0
|
|
HG23
|
A:THR178
|
4.5
|
44.6
|
1.0
|
|
HG21
|
A:THR178
|
4.5
|
44.6
|
1.0
|
|
HB3
|
A:ALA418
|
4.6
|
48.3
|
1.0
|
|
HG1
|
A:THR417
|
4.6
|
41.4
|
1.0
|
|
HH12
|
A:ARG176
|
4.7
|
37.0
|
1.0
|
|
N
|
A:GLN347
|
4.7
|
30.6
|
1.0
|
|
H
|
A:THR417
|
4.7
|
42.1
|
1.0
|
|
O
|
A:HOH939
|
4.8
|
30.0
|
1.0
|
|
H
|
A:GLN347
|
4.9
|
36.9
|
1.0
|
|
OE1
|
A:GLN345
|
4.9
|
35.9
|
1.0
|
|
HB1
|
A:ALA418
|
4.9
|
48.3
|
1.0
|
|
HA3
|
A:GLY346
|
4.9
|
39.8
|
1.0
|
|
CD
|
A:GLN347
|
4.9
|
30.1
|
1.0
|
|
CG2
|
A:THR178
|
5.0
|
37.0
|
1.0
|
|
Barium binding site 3 out
of 12 in 9h7z
Go back to
Barium Binding Sites List in 9h7z
Barium binding site 3 out
of 12 in the Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions
 Mono view
 Stereo pair view
|
|
A full contact list of Barium with other atoms in the Ba binding
site number 3 of Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ba620
b:40.8
occ:0.35
|
O
|
A:HOH969
|
2.8
|
37.3
|
1.0
|
|
HD1
|
A:PHE160
|
3.0
|
44.6
|
1.0
|
|
O
|
A:HOH930
|
3.0
|
35.8
|
1.0
|
|
HB2
|
A:PHE160
|
3.2
|
43.6
|
1.0
|
|
ND1
|
A:HIS158
|
3.3
|
33.6
|
1.0
|
|
HD3
|
A:PRO149
|
3.3
|
44.8
|
1.0
|
|
HG3
|
A:PRO216
|
3.3
|
37.8
|
1.0
|
|
HG3
|
A:PRO175
|
3.5
|
40.8
|
1.0
|
|
O
|
A:HOH912
|
3.5
|
33.0
|
1.0
|
|
HG3
|
A:PRO149
|
3.6
|
44.1
|
1.0
|
|
HB3
|
A:HIS158
|
3.6
|
42.1
|
1.0
|
|
CD1
|
A:PHE160
|
3.8
|
37.1
|
1.0
|
|
HB3
|
A:PRO149
|
3.8
|
43.3
|
1.0
|
|
HD3
|
A:PRO216
|
3.9
|
36.9
|
1.0
|
|
CE1
|
A:HIS158
|
4.0
|
34.6
|
1.0
|
|
CB
|
A:PHE160
|
4.1
|
36.2
|
1.0
|
|
CD
|
A:PRO149
|
4.1
|
37.3
|
1.0
|
|
HE1
|
A:HIS158
|
4.1
|
41.6
|
1.0
|
|
CG
|
A:HIS158
|
4.1
|
35.7
|
1.0
|
|
CG
|
A:PRO216
|
4.1
|
31.4
|
1.0
|
|
CG
|
A:PRO149
|
4.2
|
36.7
|
1.0
|
|
HA
|
A:PHE215
|
4.3
|
37.4
|
1.0
|
|
N
|
A:PRO216
|
4.3
|
30.4
|
1.0
|
|
HA
|
A:PHE160
|
4.3
|
42.8
|
1.0
|
|
CD
|
A:PRO216
|
4.3
|
30.7
|
1.0
|
|
CB
|
A:HIS158
|
4.3
|
35.0
|
1.0
|
|
HA
|
A:PRO216
|
4.4
|
35.1
|
1.0
|
|
CG
|
A:PHE160
|
4.4
|
35.9
|
1.0
|
|
CG
|
A:PRO175
|
4.4
|
33.9
|
1.0
|
|
O
|
A:TYR159
|
4.4
|
34.3
|
1.0
|
|
C
|
A:PHE215
|
4.5
|
28.7
|
1.0
|
|
CB
|
A:PRO149
|
4.5
|
36.0
|
1.0
|
|
H
|
A:TYR159
|
4.5
|
40.8
|
1.0
|
|
HB3
|
A:PRO216
|
4.6
|
37.6
|
1.0
|
|
HD3
|
A:PRO175
|
4.6
|
40.4
|
1.0
|
|
CA
|
A:PHE160
|
4.6
|
35.6
|
1.0
|
|
C
|
A:TYR159
|
4.7
|
34.8
|
1.0
|
|
HD2
|
A:PRO149
|
4.7
|
44.8
|
1.0
|
|
CA
|
A:PRO216
|
4.7
|
29.2
|
1.0
|
|
HB3
|
A:PHE160
|
4.8
|
43.6
|
1.0
|
|
CB
|
A:PRO216
|
4.8
|
31.3
|
1.0
|
|
CE1
|
A:PHE160
|
4.8
|
36.8
|
1.0
|
|
HE1
|
A:PHE160
|
4.8
|
44.2
|
1.0
|
|
CA
|
A:PHE215
|
4.8
|
31.1
|
1.0
|
|
O
|
A:PHE215
|
4.8
|
29.5
|
1.0
|
|
HG2
|
A:PRO175
|
4.9
|
40.8
|
1.0
|
|
HG2
|
A:PRO216
|
4.9
|
37.8
|
1.0
|
|
O
|
A:HOH760
|
4.9
|
39.2
|
1.0
|
|
N
|
A:PHE160
|
4.9
|
35.6
|
1.0
|
|
HA
|
A:HIS158
|
4.9
|
41.8
|
1.0
|
|
N
|
A:TYR159
|
4.9
|
33.9
|
1.0
|
|
N
|
A:PRO149
|
4.9
|
35.8
|
1.0
|
|
Barium binding site 4 out
of 12 in 9h7z
Go back to
Barium Binding Sites List in 9h7z
Barium binding site 4 out
of 12 in the Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions
 Mono view
 Stereo pair view
|
|
A full contact list of Barium with other atoms in the Ba binding
site number 4 of Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ba621
b:47.7
occ:0.32
|
H
|
A:LEU373
|
2.8
|
48.6
|
1.0
|
|
HH12
|
A:ARG400
|
2.8
|
60.0
|
1.0
|
|
HB2
|
A:LEU373
|
3.0
|
50.8
|
1.0
|
|
O
|
A:ASN370
|
3.3
|
46.6
|
1.0
|
|
HA
|
A:THR371
|
3.3
|
48.5
|
1.0
|
|
HG
|
A:LEU373
|
3.5
|
52.1
|
1.0
|
|
C
|
A:THR371
|
3.5
|
41.2
|
1.0
|
|
N
|
A:LEU373
|
3.6
|
40.4
|
1.0
|
|
NH1
|
A:ARG400
|
3.6
|
49.9
|
1.0
|
|
H
|
A:GLU374
|
3.7
|
49.5
|
1.0
|
|
O
|
A:THR371
|
3.7
|
42.0
|
1.0
|
|
CA
|
A:THR371
|
3.8
|
40.3
|
1.0
|
|
C
|
A:ASN370
|
3.8
|
45.3
|
1.0
|
|
CB
|
A:LEU373
|
3.8
|
42.2
|
1.0
|
|
HD12
|
A:LEU373
|
3.9
|
54.3
|
1.0
|
|
N
|
A:THR371
|
3.9
|
42.3
|
1.0
|
|
N
|
A:LYS372
|
3.9
|
40.1
|
1.0
|
|
HH11
|
A:ARG400
|
4.0
|
60.0
|
1.0
|
|
CG
|
A:LEU373
|
4.0
|
43.4
|
1.0
|
|
HH22
|
A:ARG400
|
4.1
|
60.3
|
1.0
|
|
H
|
A:LYS372
|
4.1
|
48.2
|
1.0
|
|
O
|
A:HOH887
|
4.1
|
47.1
|
1.0
|
|
CA
|
A:LEU373
|
4.3
|
40.5
|
1.0
|
|
N
|
A:GLU374
|
4.4
|
41.1
|
1.0
|
|
CD1
|
A:LEU373
|
4.5
|
45.2
|
1.0
|
|
H
|
A:THR371
|
4.5
|
50.8
|
1.0
|
|
HB2
|
A:GLU374
|
4.5
|
58.9
|
1.0
|
|
C
|
A:LYS372
|
4.5
|
39.2
|
1.0
|
|
CZ
|
A:ARG400
|
4.6
|
52.1
|
1.0
|
|
HB3
|
A:LEU373
|
4.6
|
50.8
|
1.0
|
|
NH2
|
A:ARG400
|
4.7
|
50.2
|
1.0
|
|
CA
|
A:LYS372
|
4.7
|
38.0
|
1.0
|
|
O
|
A:LEU369
|
4.7
|
42.0
|
1.0
|
|
HA
|
A:ASN370
|
4.7
|
52.3
|
1.0
|
|
HA
|
A:LYS372
|
4.8
|
45.8
|
1.0
|
|
HD11
|
A:LEU393
|
4.9
|
57.8
|
1.0
|
|
CA
|
A:ASN370
|
4.9
|
43.5
|
1.0
|
|
C
|
A:LEU373
|
4.9
|
41.8
|
1.0
|
|
HD11
|
A:LEU373
|
5.0
|
54.3
|
1.0
|
|
Barium binding site 5 out
of 12 in 9h7z
Go back to
Barium Binding Sites List in 9h7z
Barium binding site 5 out
of 12 in the Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions
 Mono view
 Stereo pair view
|
|
A full contact list of Barium with other atoms in the Ba binding
site number 5 of Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ba622
b:45.7
occ:0.29
|
O
|
A:HOH1024
|
2.4
|
47.0
|
1.0
|
|
HB3
|
A:HIS387
|
2.7
|
51.8
|
1.0
|
|
O
|
A:HOH976
|
2.9
|
47.8
|
1.0
|
|
HA2
|
A:GLY529
|
3.1
|
42.8
|
1.0
|
|
HG3
|
A:PRO321
|
3.2
|
43.6
|
1.0
|
|
HD2
|
A:HIS387
|
3.3
|
59.9
|
1.0
|
|
HB2
|
A:ASN388
|
3.3
|
50.6
|
1.0
|
|
O
|
A:HOH968
|
3.5
|
40.0
|
1.0
|
|
CB
|
A:HIS387
|
3.6
|
43.1
|
1.0
|
|
HB3
|
A:ASN388
|
3.7
|
50.6
|
1.0
|
|
HB3
|
A:PRO321
|
3.7
|
42.7
|
1.0
|
|
HA3
|
A:GLY529
|
3.8
|
42.8
|
1.0
|
|
CA
|
A:GLY529
|
3.8
|
35.6
|
1.0
|
|
HB2
|
A:HIS387
|
3.9
|
51.8
|
1.0
|
|
CB
|
A:ASN388
|
4.0
|
42.1
|
1.0
|
|
CD2
|
A:HIS387
|
4.0
|
49.9
|
1.0
|
|
CG
|
A:PRO321
|
4.1
|
36.2
|
1.0
|
|
CG
|
A:HIS387
|
4.2
|
47.1
|
1.0
|
|
HD21
|
A:ASN388
|
4.2
|
60.2
|
1.0
|
|
CB
|
A:PRO321
|
4.3
|
35.5
|
1.0
|
|
HD3
|
A:PRO321
|
4.4
|
44.1
|
1.0
|
|
N
|
A:ASN388
|
4.4
|
40.3
|
1.0
|
|
H
|
A:ASN388
|
4.4
|
48.4
|
1.0
|
|
O
|
A:HOH1005
|
4.4
|
40.3
|
1.0
|
|
H
|
A:HIS387
|
4.5
|
46.5
|
1.0
|
|
N
|
A:GLY529
|
4.5
|
38.2
|
1.0
|
|
O
|
A:HOH841
|
4.5
|
36.2
|
1.0
|
|
H
|
A:GLY529
|
4.5
|
46.0
|
1.0
|
|
HB2
|
A:PRO321
|
4.6
|
42.7
|
1.0
|
|
C
|
A:HIS387
|
4.6
|
41.9
|
1.0
|
|
CA
|
A:HIS387
|
4.6
|
38.6
|
1.0
|
|
HG2
|
A:PRO321
|
4.7
|
43.6
|
1.0
|
|
CD
|
A:PRO321
|
4.8
|
36.6
|
1.0
|
|
CA
|
A:ASN388
|
4.8
|
42.2
|
1.0
|
|
ND2
|
A:ASN388
|
4.9
|
50.1
|
1.0
|
|
C
|
A:GLY529
|
5.0
|
34.9
|
1.0
|
|
N
|
A:HIS387
|
5.0
|
38.6
|
1.0
|
|
Barium binding site 6 out
of 12 in 9h7z
Go back to
Barium Binding Sites List in 9h7z
Barium binding site 6 out
of 12 in the Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions
 Mono view
 Stereo pair view
|
|
A full contact list of Barium with other atoms in the Ba binding
site number 6 of Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ba623
b:71.3
occ:0.31
|
O
|
A:HOH1004
|
2.6
|
46.0
|
1.0
|
|
HB2
|
A:ASP442
|
3.2
|
38.0
|
1.0
|
|
O
|
A:HOH901
|
3.3
|
32.8
|
1.0
|
|
HE2
|
A:LYS441
|
3.5
|
73.5
|
1.0
|
|
HA
|
A:ASP442
|
3.5
|
38.6
|
1.0
|
|
HZ3
|
A:LYS441
|
4.0
|
74.6
|
1.0
|
|
CB
|
A:ASP442
|
4.0
|
31.6
|
1.0
|
|
CA
|
A:ASP442
|
4.1
|
32.0
|
1.0
|
|
HZ1
|
A:LYS441
|
4.2
|
74.6
|
1.0
|
|
HG2
|
A:LYS441
|
4.2
|
54.6
|
1.0
|
|
HB2
|
A:LYS273
|
4.3
|
46.0
|
1.0
|
|
HB3
|
A:LYS441
|
4.3
|
49.2
|
1.0
|
|
CE
|
A:LYS441
|
4.3
|
61.2
|
1.0
|
|
NZ
|
A:LYS441
|
4.3
|
62.1
|
1.0
|
|
N
|
A:ASP442
|
4.4
|
32.9
|
1.0
|
|
HD2
|
A:LYS273
|
4.4
|
51.6
|
1.0
|
|
CG
|
A:ASP442
|
4.5
|
31.9
|
1.0
|
|
C
|
A:LYS441
|
4.7
|
34.7
|
1.0
|
|
OD1
|
A:ASP442
|
4.7
|
29.5
|
1.0
|
|
O
|
A:LYS441
|
4.7
|
32.0
|
1.0
|
|
H
|
A:ASP442
|
4.7
|
39.6
|
1.0
|
|
HB3
|
A:ASP442
|
4.8
|
38.0
|
1.0
|
|
HD3
|
A:LYS273
|
4.8
|
51.6
|
1.0
|
|
HD3
|
A:PRO443
|
4.9
|
35.8
|
1.0
|
|
HE3
|
A:LYS441
|
4.9
|
73.5
|
1.0
|
|
O
|
A:HOH808
|
4.9
|
36.1
|
1.0
|
|
CG
|
A:LYS441
|
4.9
|
45.5
|
1.0
|
|
O
|
A:HOH910
|
5.0
|
38.3
|
1.0
|
|
HB3
|
A:LYS273
|
5.0
|
46.0
|
1.0
|
|
Barium binding site 7 out
of 12 in 9h7z
Go back to
Barium Binding Sites List in 9h7z
Barium binding site 7 out
of 12 in the Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions
 Mono view
 Stereo pair view
|
|
A full contact list of Barium with other atoms in the Ba binding
site number 7 of Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Ba612
b:32.8
occ:0.31
|
H
|
M:VAL560
|
2.6
|
32.2
|
1.0
|
|
HA
|
M:HIS559
|
2.6
|
34.6
|
1.0
|
|
CE1
|
M:HIS516
|
2.9
|
35.4
|
1.0
|
|
HG22
|
M:VAL560
|
2.9
|
33.8
|
1.0
|
|
HE1
|
M:HIS516
|
2.9
|
42.6
|
1.0
|
|
N1
|
M:FAD606
|
3.2
|
25.6
|
1.0
|
|
NE2
|
M:HIS516
|
3.2
|
33.7
|
1.0
|
|
HB3
|
M:HIS559
|
3.2
|
34.4
|
1.0
|
|
ND1
|
M:HIS516
|
3.2
|
36.7
|
1.0
|
|
N
|
M:VAL560
|
3.3
|
26.8
|
1.0
|
|
C10
|
M:FAD606
|
3.4
|
26.4
|
1.0
|
|
CA
|
M:HIS559
|
3.4
|
28.7
|
1.0
|
|
H1'2
|
M:FAD606
|
3.4
|
30.4
|
1.0
|
|
HG13
|
M:VAL560
|
3.5
|
38.2
|
1.0
|
|
C2
|
M:FAD606
|
3.5
|
26.7
|
1.0
|
|
HD1
|
M:HIS516
|
3.6
|
44.2
|
1.0
|
|
ND1
|
M:HIS559
|
3.6
|
28.5
|
1.0
|
|
CB
|
M:HIS559
|
3.7
|
28.6
|
1.0
|
|
CD2
|
M:HIS516
|
3.7
|
34.0
|
1.0
|
|
CG
|
M:HIS516
|
3.7
|
32.6
|
1.0
|
|
CG2
|
M:VAL560
|
3.8
|
28.1
|
1.0
|
|
N10
|
M:FAD606
|
3.9
|
25.9
|
1.0
|
|
C4X
|
M:FAD606
|
3.9
|
25.7
|
1.0
|
|
C
|
M:HIS559
|
3.9
|
27.7
|
1.0
|
|
N3
|
M:FAD606
|
3.9
|
26.2
|
1.0
|
|
O2
|
M:FAD606
|
4.0
|
26.9
|
1.0
|
|
CG
|
M:HIS559
|
4.0
|
28.9
|
1.0
|
|
C1'
|
M:FAD606
|
4.1
|
25.2
|
1.0
|
|
C4
|
M:FAD606
|
4.2
|
26.5
|
1.0
|
|
HG21
|
M:VAL560
|
4.3
|
33.8
|
1.0
|
|
H1'1
|
M:FAD606
|
4.3
|
30.4
|
1.0
|
|
CG1
|
M:VAL560
|
4.3
|
31.8
|
1.0
|
|
HD2
|
M:HIS516
|
4.3
|
40.9
|
1.0
|
|
O
|
M:HOH926
|
4.3
|
34.7
|
1.0
|
|
HG23
|
M:VAL560
|
4.4
|
33.8
|
1.0
|
|
CB
|
M:VAL560
|
4.4
|
30.0
|
1.0
|
|
CA
|
M:VAL560
|
4.4
|
28.6
|
1.0
|
|
HN3
|
M:FAD606
|
4.4
|
31.6
|
1.0
|
|
O
|
M:HOH941
|
4.6
|
29.9
|
1.0
|
|
HB2
|
M:HIS559
|
4.6
|
34.4
|
1.0
|
|
O
|
M:SER558
|
4.6
|
29.7
|
1.0
|
|
N5
|
M:FAD606
|
4.6
|
28.0
|
1.0
|
|
HB3
|
M:HIS516
|
4.6
|
37.2
|
1.0
|
|
N
|
M:HIS559
|
4.6
|
28.3
|
1.0
|
|
C9A
|
M:FAD606
|
4.7
|
26.6
|
1.0
|
|
H
|
M:MET561
|
4.7
|
33.6
|
1.0
|
|
CE1
|
M:HIS559
|
4.7
|
29.4
|
1.0
|
|
HG11
|
M:VAL560
|
4.8
|
38.2
|
1.0
|
|
O
|
M:HOH935
|
4.8
|
33.0
|
1.0
|
|
CB
|
M:HIS516
|
4.8
|
30.9
|
1.0
|
|
HG12
|
M:VAL560
|
5.0
|
38.2
|
1.0
|
|
C5X
|
M:FAD606
|
5.0
|
26.7
|
1.0
|
|
Barium binding site 8 out
of 12 in 9h7z
Go back to
Barium Binding Sites List in 9h7z
Barium binding site 8 out
of 12 in the Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions
 Mono view
 Stereo pair view
|
|
A full contact list of Barium with other atoms in the Ba binding
site number 8 of Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Ba613
b:39.7
occ:0.41
|
H
|
M:GLU221
|
2.4
|
44.0
|
1.0
|
|
HD2
|
M:HIS172
|
2.9
|
45.9
|
1.0
|
|
HD3
|
M:ARG147
|
3.1
|
45.2
|
1.0
|
|
HB3
|
M:HIS220
|
3.2
|
42.6
|
1.0
|
|
HB2
|
M:GLU221
|
3.2
|
50.4
|
1.0
|
|
N
|
M:GLU221
|
3.2
|
36.6
|
1.0
|
|
HA
|
M:HIS220
|
3.5
|
40.9
|
1.0
|
|
O
|
M:HOH912
|
3.6
|
36.9
|
1.0
|
|
HB3
|
M:GLU221
|
3.6
|
50.4
|
1.0
|
|
HH11
|
M:ARG147
|
3.6
|
40.9
|
1.0
|
|
CD2
|
M:HIS172
|
3.7
|
38.1
|
1.0
|
|
O
|
M:HOH931
|
3.7
|
46.9
|
1.0
|
|
CB
|
M:GLU221
|
3.8
|
41.9
|
1.0
|
|
CB
|
M:HIS220
|
3.9
|
35.4
|
1.0
|
|
NH1
|
M:ARG147
|
4.0
|
34.0
|
1.0
|
|
CA
|
M:HIS220
|
4.0
|
34.0
|
1.0
|
|
CD
|
M:ARG147
|
4.0
|
37.6
|
1.0
|
|
O
|
M:HOH860
|
4.0
|
32.2
|
1.0
|
|
CA
|
M:GLU221
|
4.1
|
36.8
|
1.0
|
|
C
|
M:HIS220
|
4.1
|
33.6
|
1.0
|
|
HD2
|
M:ARG147
|
4.3
|
45.2
|
1.0
|
|
HB3
|
M:HIS172
|
4.3
|
41.8
|
1.0
|
|
HH12
|
M:ARG147
|
4.3
|
40.9
|
1.0
|
|
ND1
|
M:HIS220
|
4.4
|
40.3
|
1.0
|
|
CZ
|
M:ARG147
|
4.4
|
35.5
|
1.0
|
|
CG
|
M:HIS220
|
4.5
|
37.6
|
1.0
|
|
NE
|
M:ARG147
|
4.5
|
37.3
|
1.0
|
|
NE2
|
M:HIS172
|
4.5
|
38.3
|
1.0
|
|
H
|
M:ASP222
|
4.6
|
42.9
|
1.0
|
|
CG
|
M:HIS172
|
4.6
|
37.5
|
1.0
|
|
HA
|
M:GLU221
|
4.6
|
44.2
|
1.0
|
|
HB2
|
M:HIS220
|
4.7
|
42.6
|
1.0
|
|
OE1
|
M:GLU221
|
4.9
|
63.1
|
1.0
|
|
CB
|
M:HIS172
|
5.0
|
34.8
|
1.0
|
|
Barium binding site 9 out
of 12 in 9h7z
Go back to
Barium Binding Sites List in 9h7z
Barium binding site 9 out
of 12 in the Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions
 Mono view
 Stereo pair view
|
|
A full contact list of Barium with other atoms in the Ba binding
site number 9 of Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Ba614
b:38.3
occ:0.34
|
O
|
M:HOH898
|
3.0
|
36.9
|
1.0
|
|
O
|
M:HOH930
|
3.0
|
36.0
|
1.0
|
|
HD3
|
M:PRO149
|
3.1
|
44.1
|
1.0
|
|
HB2
|
M:PHE160
|
3.2
|
43.6
|
1.0
|
|
ND1
|
M:HIS158
|
3.2
|
33.8
|
1.0
|
|
HD1
|
M:PHE160
|
3.2
|
45.7
|
1.0
|
|
HG3
|
M:PRO175
|
3.3
|
40.6
|
1.0
|
|
HG3
|
M:PRO216
|
3.4
|
38.1
|
1.0
|
|
HG3
|
M:PRO149
|
3.4
|
45.9
|
1.0
|
|
O
|
M:HOH949
|
3.4
|
30.9
|
1.0
|
|
HB3
|
M:HIS158
|
3.4
|
41.6
|
1.0
|
|
HB3
|
M:PRO149
|
3.6
|
43.9
|
1.0
|
|
CD
|
M:PRO149
|
3.9
|
36.7
|
1.0
|
|
CG
|
M:PRO149
|
4.0
|
38.2
|
1.0
|
|
CE1
|
M:HIS158
|
4.0
|
31.6
|
1.0
|
|
CG
|
M:HIS158
|
4.0
|
33.7
|
1.0
|
|
CD1
|
M:PHE160
|
4.0
|
38.0
|
1.0
|
|
HD3
|
M:PRO216
|
4.0
|
36.8
|
1.0
|
|
HE1
|
M:HIS158
|
4.1
|
38.0
|
1.0
|
|
CB
|
M:PHE160
|
4.1
|
36.3
|
1.0
|
|
CB
|
M:HIS158
|
4.2
|
34.6
|
1.0
|
|
CG
|
M:PRO216
|
4.2
|
31.7
|
1.0
|
|
CG
|
M:PRO175
|
4.2
|
33.7
|
1.0
|
|
CB
|
M:PRO149
|
4.2
|
36.5
|
1.0
|
|
N
|
M:PRO216
|
4.3
|
30.7
|
1.0
|
|
HA
|
M:PRO216
|
4.3
|
34.9
|
1.0
|
|
CD
|
M:PRO216
|
4.4
|
30.6
|
1.0
|
|
HA
|
M:PHE215
|
4.5
|
34.7
|
1.0
|
|
HB3
|
M:PRO216
|
4.5
|
37.4
|
1.0
|
|
HD3
|
M:PRO175
|
4.5
|
39.0
|
1.0
|
|
C
|
M:PHE215
|
4.5
|
28.8
|
1.0
|
|
CG
|
M:PHE160
|
4.5
|
36.7
|
1.0
|
|
O
|
M:TYR159
|
4.5
|
36.1
|
1.0
|
|
HA
|
M:PHE160
|
4.5
|
43.7
|
1.0
|
|
HD2
|
M:PRO149
|
4.6
|
44.1
|
1.0
|
|
H
|
M:TYR159
|
4.6
|
41.8
|
1.0
|
|
HG2
|
M:PRO175
|
4.7
|
40.6
|
1.0
|
|
CA
|
M:PRO216
|
4.7
|
29.0
|
1.0
|
|
HB3
|
M:PHE160
|
4.7
|
43.6
|
1.0
|
|
N
|
M:PRO149
|
4.7
|
37.2
|
1.0
|
|
CB
|
M:PRO216
|
4.7
|
31.1
|
1.0
|
|
C
|
M:TYR159
|
4.8
|
36.2
|
1.0
|
|
CA
|
M:PHE160
|
4.8
|
36.3
|
1.0
|
|
HB3
|
M:PRO175
|
4.8
|
40.5
|
1.0
|
|
HB2
|
M:HIS158
|
4.9
|
41.6
|
1.0
|
|
O
|
M:PHE215
|
4.9
|
29.3
|
1.0
|
|
HG2
|
M:PRO149
|
4.9
|
45.9
|
1.0
|
|
CD
|
M:PRO175
|
4.9
|
32.4
|
1.0
|
|
HA
|
M:HIS158
|
4.9
|
41.0
|
1.0
|
|
N
|
M:TYR159
|
4.9
|
34.7
|
1.0
|
|
HG2
|
M:PRO216
|
4.9
|
38.1
|
1.0
|
|
HB2
|
M:PRO149
|
5.0
|
43.9
|
1.0
|
|
N
|
M:PHE160
|
5.0
|
36.0
|
1.0
|
|
HA
|
M:PRO175
|
5.0
|
35.7
|
1.0
|
|
CA
|
M:PHE215
|
5.0
|
28.8
|
1.0
|
|
Barium binding site 10 out
of 12 in 9h7z
Go back to
Barium Binding Sites List in 9h7z
Barium binding site 10 out
of 12 in the Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions
 Mono view
 Stereo pair view
|
|
A full contact list of Barium with other atoms in the Ba binding
site number 10 of Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Ba615
b:50.1
occ:0.31
|
O
|
M:HOH828
|
2.7
|
45.6
|
1.0
|
|
HE3
|
M:LYS273
|
3.0
|
65.8
|
1.0
|
|
HB2
|
M:ASP442
|
3.1
|
39.3
|
1.0
|
|
O
|
M:HOH757
|
3.2
|
35.2
|
1.0
|
|
HG3
|
M:LYS441
|
3.3
|
52.7
|
1.0
|
|
HZ2
|
M:LYS441
|
3.3
|
77.7
|
1.0
|
|
HA
|
M:ASP442
|
3.4
|
37.8
|
1.0
|
|
HD2
|
M:LYS273
|
3.4
|
56.3
|
1.0
|
|
HZ2
|
M:LYS273
|
3.4
|
74.4
|
1.0
|
|
CE
|
M:LYS273
|
3.7
|
54.7
|
1.0
|
|
HZ3
|
M:LYS441
|
3.7
|
77.7
|
1.0
|
|
HG3
|
M:LYS273
|
3.8
|
53.1
|
1.0
|
|
CB
|
M:ASP442
|
3.9
|
32.7
|
1.0
|
|
CD
|
M:LYS273
|
3.9
|
46.8
|
1.0
|
|
NZ
|
M:LYS441
|
3.9
|
64.7
|
1.0
|
|
NZ
|
M:LYS273
|
4.0
|
61.9
|
1.0
|
|
CA
|
M:ASP442
|
4.0
|
31.4
|
1.0
|
|
HZ1
|
M:LYS273
|
4.2
|
74.4
|
1.0
|
|
CG
|
M:LYS441
|
4.2
|
43.8
|
1.0
|
|
N
|
M:ASP442
|
4.3
|
32.5
|
1.0
|
|
CG
|
M:LYS273
|
4.4
|
44.2
|
1.0
|
|
CG
|
M:ASP442
|
4.4
|
32.1
|
1.0
|
|
HZ1
|
M:LYS441
|
4.4
|
77.7
|
1.0
|
|
OD1
|
M:ASP442
|
4.5
|
31.7
|
1.0
|
|
O
|
M:LYS441
|
4.5
|
32.0
|
1.0
|
|
C
|
M:LYS441
|
4.5
|
33.4
|
1.0
|
|
HE2
|
M:LYS273
|
4.6
|
65.8
|
1.0
|
|
H
|
M:ASP442
|
4.6
|
39.1
|
1.0
|
|
HG2
|
M:LYS441
|
4.6
|
52.7
|
1.0
|
|
HD3
|
M:LYS441
|
4.6
|
61.3
|
1.0
|
|
HD3
|
M:PRO443
|
4.6
|
37.8
|
1.0
|
|
HB3
|
M:ASP442
|
4.7
|
39.3
|
1.0
|
|
O
|
M:HOH781
|
4.7
|
40.7
|
1.0
|
|
HZ3
|
M:LYS273
|
4.7
|
74.4
|
1.0
|
|
HB2
|
M:LYS273
|
4.8
|
45.9
|
1.0
|
|
HB2
|
M:LYS441
|
4.8
|
47.9
|
1.0
|
|
HD3
|
M:LYS273
|
4.8
|
56.3
|
1.0
|
|
CD
|
M:LYS441
|
4.9
|
51.0
|
1.0
|
|
O
|
M:HOH975
|
4.9
|
41.9
|
1.0
|
|
HD2
|
M:PRO443
|
4.9
|
37.8
|
1.0
|
|
Reference:
J.A.Bauer,
V.Bauerova.
Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions To Be Published.
Page generated: Sat Dec 13 12:25:17 2025
|