Atomistry » Barium » PDB 1djh-2x6b » 1i0f
Atomistry »
  Barium »
    PDB 1djh-2x6b »
      1i0f »

Barium in PDB 1i0f: 1.6 A Structure of the A-Decamer Gcgtatacgc with A Single 2'-O-Aminooxyethyl Thymine in Place of T6, Ba-Form

Protein crystallography data

The structure of 1.6 A Structure of the A-Decamer Gcgtatacgc with A Single 2'-O-Aminooxyethyl Thymine in Place of T6, Ba-Form, PDB code: 1i0f was solved by V.Tereshko, C.J.Wilds, G.Minasov, T.P.Prakash, M.A.Maier, A.Howard, Z.Wawrzak, M.Manoharan, M.Egli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 24.990, 44.570, 45.120, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 21.2

Barium Binding Sites:

The binding sites of Barium atom in the 1.6 A Structure of the A-Decamer Gcgtatacgc with A Single 2'-O-Aminooxyethyl Thymine in Place of T6, Ba-Form (pdb code 1i0f). This binding sites where shown within 5.0 Angstroms radius around Barium atom.
In total only one binding site of Barium was determined in the 1.6 A Structure of the A-Decamer Gcgtatacgc with A Single 2'-O-Aminooxyethyl Thymine in Place of T6, Ba-Form, PDB code: 1i0f:

Barium binding site 1 out of 1 in 1i0f

Go back to Barium Binding Sites List in 1i0f
Barium binding site 1 out of 1 in the 1.6 A Structure of the A-Decamer Gcgtatacgc with A Single 2'-O-Aminooxyethyl Thymine in Place of T6, Ba-Form


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 1 of 1.6 A Structure of the A-Decamer Gcgtatacgc with A Single 2'-O-Aminooxyethyl Thymine in Place of T6, Ba-Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba22

b:35.3
occ:1.00
O A:HOH145 2.4 25.2 1.0
O B:HOH144 2.6 27.9 1.0
O A:HOH171 2.6 31.2 1.0
O6 A:DG3 2.8 18.8 1.0
O B:HOH213 2.8 22.0 0.5
O A:HOH118 3.1 30.7 1.0
O A:HOH180 3.5 37.4 1.0
C6 A:DG3 3.8 18.6 1.0
N7 A:DG3 3.9 18.5 1.0
N4 A:DC2 4.0 19.0 1.0
C5 A:DG3 4.2 18.4 1.0
N4 B:DC18 4.6 22.0 1.0
O A:HOH178 4.6 29.6 0.5
N6 B:DA17 4.7 18.2 1.0
O B:HOH111 4.7 25.1 1.0
C4 A:DC2 4.7 18.8 1.0
O4 A:DT4 4.8 16.1 1.0
O B:HOH205 4.9 27.7 0.5
O4 B:12716 4.9 19.6 1.0

Reference:

V.Tereshko, C.J.Wilds, G.Minasov, T.P.Prakash, M.A.Maier, A.Howard, Z.Wawrzak, M.Manoharan, M.Egli. Detection of Alkali Metal Ions in Dna Crystals Using State-of-the-Art X-Ray Diffraction Experiments. Nucleic Acids Res. V. 29 1208 2001.
ISSN: ISSN 0305-1048
PubMed: 11222771
DOI: 10.1093/NAR/29.5.1208
Page generated: Tue Oct 27 17:00:05 2020

Last articles

Xe in 6AYK
Xe in 6QII
Xe in 6ASM
Xe in 5NSW
Xe in 6FY9
Xe in 5O1K
Xe in 5O27
Xe in 5M69
Xe in 5KPU
Xe in 5I63
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy