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Barium in PDB 1sof: Crystal Structure of the Azotobacter Vinelandii Bacterioferritin at 2.6 A Resolution

Protein crystallography data

The structure of Crystal Structure of the Azotobacter Vinelandii Bacterioferritin at 2.6 A Resolution, PDB code: 1sof was solved by H.L.Liu, J.F.Huang, R.C.Bi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.32 / 2.60
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 124.965, 124.965, 287.406, 90.00, 90.00, 120.00
R / Rfree (%) 19.6 / 24.6

Other elements in 1sof:

The structure of Crystal Structure of the Azotobacter Vinelandii Bacterioferritin at 2.6 A Resolution also contains other interesting chemical elements:

Magnesium (Mg) 10 atoms
Iron (Fe) 20 atoms

Barium Binding Sites:

The binding sites of Barium atom in the Crystal Structure of the Azotobacter Vinelandii Bacterioferritin at 2.6 A Resolution (pdb code 1sof). This binding sites where shown within 5.0 Angstroms radius around Barium atom.
In total 2 binding sites of Barium where determined in the Crystal Structure of the Azotobacter Vinelandii Bacterioferritin at 2.6 A Resolution, PDB code: 1sof:
Jump to Barium binding site number: 1; 2;

Barium binding site 1 out of 2 in 1sof

Go back to Barium Binding Sites List in 1sof
Barium binding site 1 out of 2 in the Crystal Structure of the Azotobacter Vinelandii Bacterioferritin at 2.6 A Resolution


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 1 of Crystal Structure of the Azotobacter Vinelandii Bacterioferritin at 2.6 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba402

b:23.8
occ:1.00
OE1 F:GLN151 3.0 26.7 1.0
OD1 G:ASN148 3.0 17.8 1.0
OD1 F:ASN148 3.0 18.4 1.0
OE1 A:GLN151 3.1 21.8 1.0
OD1 A:ASN148 3.2 22.5 1.0
OE1 G:GLN151 3.3 27.0 1.0
CD F:GLN151 3.9 26.5 1.0
CG F:ASN148 4.0 19.6 1.0
CD A:GLN151 4.0 22.4 1.0
CG G:ASN148 4.0 21.7 1.0
CG A:ASN148 4.0 20.1 1.0
CD G:GLN151 4.1 24.9 1.0
NE2 G:GLN151 4.1 24.4 1.0
NE2 F:GLN151 4.1 26.4 1.0
NE2 A:GLN151 4.2 20.2 1.0
ND2 F:ASN148 4.4 15.6 1.0
ND2 A:ASN148 4.4 18.0 1.0
ND2 G:ASN148 4.5 21.6 1.0

Barium binding site 2 out of 2 in 1sof

Go back to Barium Binding Sites List in 1sof
Barium binding site 2 out of 2 in the Crystal Structure of the Azotobacter Vinelandii Bacterioferritin at 2.6 A Resolution


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 2 of Crystal Structure of the Azotobacter Vinelandii Bacterioferritin at 2.6 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ba401

b:25.5
occ:1.00
OD1 B:ASN148 2.6 25.4 1.0
OE1 B:GLN151 2.9 11.9 1.0
OD1 D:ASN148 2.9 32.4 1.0
OE1 D:GLN151 3.0 18.4 1.0
ND2 D:ASN148 3.3 40.0 1.0
CG D:ASN148 3.5 33.5 1.0
CG B:ASN148 3.7 23.9 1.0
CD B:GLN151 3.8 15.0 1.0
CD D:GLN151 3.9 22.7 1.0
NE2 B:GLN151 4.1 10.9 1.0
NE2 D:GLN151 4.1 21.1 1.0
ND2 B:ASN148 4.3 22.6 1.0
CB B:ASN148 4.9 23.4 1.0
O B:HOH1214 4.9 17.2 1.0
CB D:ASN148 5.0 33.3 1.0

Reference:

H.L.Liu, H.N.Zhou, W.M.Xing, J.F.Zhao, S.X.Li, J.F.Huang, R.C.Bi. 2.6 A Resolution Crystal Structure of the Bacterioferritin From Azotobacter Vinelandii Febs Lett. V. 573 93 2004.
ISSN: ISSN 0014-5793
PubMed: 15327981
DOI: 10.1016/J.FEBSLET.2004.07.054
Page generated: Tue Oct 27 17:00:08 2020

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