Barium in PDB 1vbz: Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U Mutaion, in BA2+ Solution

The structure of Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U Mutaion, in BA2+ Solution, PDB code: 1vbz was solved by A.Ke, K.Zhou, F.Ding, J.H.D.Cate, J.A.Doudna, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.43 / 2.80
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	108.630, 108.630, 190.072, 90.00, 90.00, 120.00
R / Rfree (%)	25.3 / 26.8

The binding sites of Barium atom in the Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U Mutaion, in BA2+ Solution (pdb code 1vbz). This binding sites where shown within 5.0 Angstroms radius around Barium atom.
In total 2 binding sites of Barium where determined in the Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U Mutaion, in BA2+ Solution, PDB code: 1vbz:
Jump to Barium binding site number: 1; 2;

Barium binding site 1 out of 2 in the Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U Mutaion, in BA2+ Solution


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 1 of Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U Mutaion, in BA2+ Solution within 5.0Å range: probe atom residue distance (Å) B Occ B:Ba201 b:84.7 occ:1.00 O4 B:U163 2.8 72.7 1.0 O2 B:U120 3.0 62.1 1.0 OP2 B:G101 3.5 99.8 1.0 OP1 B:U123 3.8 87.7 1.0 C4 B:U163 3.9 72.2 1.0 C2 B:U120 4.2 63.8 1.0 N3 B:U163 4.4 71.9 1.0 N2 B:G128 4.6 92.4 1.0 N3 B:U120 4.8 63.1 1.0 P B:G101 4.8 98.8 1.0 P B:U123 5.0 89.0 1.0

Barium binding site 2 out of 2 in the Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U Mutaion, in BA2+ Solution


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 2 of Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U Mutaion, in BA2+ Solution within 5.0Å range: probe atom residue distance (Å) B Occ B:Ba202 b:96.9 occ:0.60 O2' B:C141 2.9 76.3 1.0 C2' B:C141 3.7 74.6 1.0 O6 B:G159 4.5 51.6 1.0 C3' B:C141 4.6 75.9 1.0 O A:HOH105 4.8 40.1 1.0 N7 B:G159 4.9 52.9 1.0 O4 B:U160 5.0 56.8 1.0 C1' B:C141 5.0 72.5 1.0

A.Ke, K.Zhou, F.Ding, J.H.D.Cate, J.A.Doudna. A Conformational Switch Controls Hepatitis Delta Virus Ribozyme Catalysis Nature V. 429 201 2004.
ISSN: ISSN 0028-0836
PubMed: 15141216
DOI: 10.1038/NATURE02522