Atomistry » Barium » PDB 1djh-2x6b » 2bou
Atomistry »
  Barium »
    PDB 1djh-2x6b »
      2bou »

Barium in PDB 2bou: Egf Domains 1,2,5 of Human EMR2, A 7-Tm Immune System Molecule, in Complex with Barium.

Protein crystallography data

The structure of Egf Domains 1,2,5 of Human EMR2, A 7-Tm Immune System Molecule, in Complex with Barium., PDB code: 2bou was solved by R.J.M.Abbott, I.Spendlove, P.Roversi, P.Teriete, V.Knott, P.A.Handford, J.M.Mcdonnell, S.M.Lea, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 51.299 / 1.90
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 91.060, 61.560, 35.470, 90.00, 90.00, 90.00
R / Rfree (%) 23.76 / 25.47

Other elements in 2bou:

The structure of Egf Domains 1,2,5 of Human EMR2, A 7-Tm Immune System Molecule, in Complex with Barium. also contains other interesting chemical elements:

Arsenic (As) 1 atom
Calcium (Ca) 2 atoms

Barium Binding Sites:

The binding sites of Barium atom in the Egf Domains 1,2,5 of Human EMR2, A 7-Tm Immune System Molecule, in Complex with Barium. (pdb code 2bou). This binding sites where shown within 5.0 Angstroms radius around Barium atom.
In total 2 binding sites of Barium where determined in the Egf Domains 1,2,5 of Human EMR2, A 7-Tm Immune System Molecule, in Complex with Barium., PDB code: 2bou:
Jump to Barium binding site number: 1; 2;

Barium binding site 1 out of 2 in 2bou

Go back to Barium Binding Sites List in 2bou
Barium binding site 1 out of 2 in the Egf Domains 1,2,5 of Human EMR2, A 7-Tm Immune System Molecule, in Complex with Barium.


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 1 of Egf Domains 1,2,5 of Human EMR2, A 7-Tm Immune System Molecule, in Complex with Barium. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba155

b:20.1
occ:0.30
CA A:CA157 1.0 17.7 0.7
O A:THR115 2.0 37.8 1.0
OD1 A:ASP95 2.4 30.8 1.0
OD2 A:ASP95 2.5 41.6 1.0
OD1 A:ASN114 2.5 27.7 1.0
CG A:ASP95 2.7 30.7 1.0
O A:SER118 2.8 29.0 1.0
O A:VAL96 2.8 27.4 1.0
O A:HOH2078 2.9 27.0 1.0
OE2 A:GLU98 3.2 26.0 1.0
CG A:ASN114 3.3 40.3 1.0
C A:THR115 3.3 39.4 1.0
ND2 A:ASN114 3.4 31.8 1.0
N A:GLY117 3.8 33.2 1.0
N A:THR115 3.8 35.3 1.0
N A:SER118 3.9 29.3 1.0
C A:SER118 3.9 30.4 1.0
C A:VAL96 3.9 28.4 1.0
CA A:VAL116 4.1 37.6 1.0
N A:VAL116 4.1 37.2 1.0
CD A:GLU98 4.2 34.1 1.0
CA A:THR115 4.2 35.4 1.0
CB A:ASP95 4.3 25.6 1.0
CA A:SER118 4.4 28.0 1.0
C A:VAL116 4.4 39.9 1.0
N A:VAL96 4.5 24.8 1.0
OE1 A:GLU98 4.5 31.1 1.0
C A:GLY117 4.5 34.0 1.0
CA A:ASP97 4.5 25.0 1.0
CB A:ASN114 4.6 32.5 1.0
N A:ASP97 4.6 25.2 1.0
CA A:GLY117 4.7 31.8 1.0
C A:ASN114 4.7 39.3 1.0
N A:GLU98 4.8 25.2 1.0
CA A:ASN114 4.8 34.8 1.0
OG1 A:THR115 4.8 43.8 1.0
CA A:VAL96 4.9 25.7 1.0
C A:ASP95 4.9 27.6 1.0
O A:GLY75 5.0 26.8 1.0

Barium binding site 2 out of 2 in 2bou

Go back to Barium Binding Sites List in 2bou
Barium binding site 2 out of 2 in the Egf Domains 1,2,5 of Human EMR2, A 7-Tm Immune System Molecule, in Complex with Barium.


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 2 of Egf Domains 1,2,5 of Human EMR2, A 7-Tm Immune System Molecule, in Complex with Barium. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba156

b:20.9
occ:0.30
CA A:CA158 0.8 14.2 0.7
O A:THR64 2.1 25.8 1.0
O A:SER67 2.3 25.4 1.0
O A:HOH2048 2.5 22.6 1.0
OD1 A:ASP43 2.5 25.1 1.0
OD1 A:ASN63 2.6 20.4 1.0
OE1 A:GLU46 2.9 26.1 1.0
O A:ILE44 3.0 22.0 1.0
OD2 A:ASP43 3.0 28.1 1.0
CG A:ASP43 3.1 24.3 1.0
N A:SER67 3.2 28.2 1.0
C A:SER67 3.3 27.0 1.0
C A:THR64 3.3 27.9 1.0
N A:GLY66 3.6 28.9 1.0
CA A:SER67 3.7 26.1 1.0
CG A:ASN63 3.7 24.6 1.0
N A:THR64 3.8 21.2 1.0
CD A:GLU46 3.9 34.9 1.0
C A:GLY66 3.9 32.3 1.0
OE2 A:GLU46 4.0 26.8 1.0
C A:ILE44 4.1 23.2 1.0
CA A:THR64 4.2 22.3 1.0
ND2 A:ASN63 4.2 20.2 1.0
N A:GLU65 4.2 28.2 1.0
CA A:GLY66 4.2 28.1 1.0
C A:GLU65 4.2 33.4 1.0
CA A:GLU65 4.3 28.9 1.0
OG1 A:THR64 4.5 31.2 1.0
N A:TYR68 4.5 22.9 1.0
N A:ILE44 4.6 20.8 1.0
CB A:ASP43 4.6 21.4 1.0
O A:GLY26 4.7 25.8 1.0
C A:ASN63 4.7 22.2 1.0
O A:GLY66 4.8 31.6 1.0
CB A:ASN63 4.9 17.2 1.0
N A:GLU46 4.9 20.9 1.0
CA A:ASN45 4.9 20.4 1.0
CA A:ASN63 4.9 17.3 1.0
N A:ASN45 5.0 20.7 1.0
CB A:TYR68 5.0 22.2 1.0

Reference:

R.J.M.Abbott, I.Spendlove, P.Roversi, H.Fitzgibbon, V.Knott, P.Teriete, J.M.Mcdonnell, P.A.Handford, S.M.Lea. Structural and Functional Characterization of A Novel T Cell Receptor Co-Regulatory Protein Complex, CD97-CD55. J.Biol.Chem. V. 282 22023 2007.
ISSN: ISSN 0021-9258
PubMed: 17449467
DOI: 10.1074/JBC.M702588200
Page generated: Sat Dec 12 01:55:14 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy