Atomistry » Barium » PDB 1djh-2x6b » 2gpx
Atomistry »
  Barium »
    PDB 1djh-2x6b »
      2gpx »

Barium in PDB 2gpx: 2'-Me-Se and Br Derivitation of A-Dna Octamer G(Ums)G(Bru) Acac

Protein crystallography data

The structure of 2'-Me-Se and Br Derivitation of A-Dna Octamer G(Ums)G(Bru) Acac, PDB code: 2gpx was solved by J.Jiang, Z.Huang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.90 / 1.60
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 42.252, 42.252, 24.133, 90.00, 90.00, 90.00
R / Rfree (%) 18.7 / 23.8

Other elements in 2gpx:

The structure of 2'-Me-Se and Br Derivitation of A-Dna Octamer G(Ums)G(Bru) Acac also contains other interesting chemical elements:

Bromine (Br) 1 atom

Barium Binding Sites:

The binding sites of Barium atom in the 2'-Me-Se and Br Derivitation of A-Dna Octamer G(Ums)G(Bru) Acac (pdb code 2gpx). This binding sites where shown within 5.0 Angstroms radius around Barium atom.
In total only one binding site of Barium was determined in the 2'-Me-Se and Br Derivitation of A-Dna Octamer G(Ums)G(Bru) Acac, PDB code: 2gpx:

Barium binding site 1 out of 1 in 2gpx

Go back to Barium Binding Sites List in 2gpx
Barium binding site 1 out of 1 in the 2'-Me-Se and Br Derivitation of A-Dna Octamer G(Ums)G(Bru) Acac


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 1 of 2'-Me-Se and Br Derivitation of A-Dna Octamer G(Ums)G(Bru) Acac within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba101

b:27.3
occ:0.88
O A:HOH111 2.7 33.2 1.0
O4 A:UMS2 2.8 20.8 1.0
O6 A:DG3 2.9 19.1 1.0
O A:HOH105 3.0 29.0 1.0
C4 A:UMS2 3.7 19.3 1.0
O A:HOH112 3.9 39.0 1.0
C6 A:DG3 3.9 19.5 1.0
O A:HOH125 4.0 46.4 1.0
N7 A:DG3 4.1 21.5 1.0
C5 A:UMS2 4.2 19.6 1.0
C5 A:DG3 4.4 20.5 1.0
N3 A:UMS2 4.9 20.9 1.0
O A:HOH115 4.9 46.9 1.0

Reference:

J.Jiang, J.Sheng, N.Carrasco, Z.Huang. Selenium Derivatization of Nucleic Acids For Crystallography. Nucleic Acids Res. V. 35 477 2007.
ISSN: ISSN 0305-1048
PubMed: 17169989
DOI: 10.1093/NAR/GKL1070
Page generated: Wed Jul 10 15:03:04 2024

Last articles

Ca in 7XX6
Ca in 7YIV
Ca in 7YM0
Ca in 7YLQ
Ca in 7YL6
Ca in 7YL5
Ca in 7YL4
Ca in 7YIX
Ca in 7YGV
Ca in 7YG5
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy