Atomistry » Barium » PDB 1djh-2x6b » 2v2f
Atomistry »
  Barium »
    PDB 1djh-2x6b »
      2v2f »

Barium in PDB 2v2f: Crystal Structure of PBP1A From Drug-Resistant Strain 5204 From Streptococcus Pneumoniae

Enzymatic activity of Crystal Structure of PBP1A From Drug-Resistant Strain 5204 From Streptococcus Pneumoniae

All present enzymatic activity of Crystal Structure of PBP1A From Drug-Resistant Strain 5204 From Streptococcus Pneumoniae:
2.4.1.129; 3.4.16.4;

Protein crystallography data

The structure of Crystal Structure of PBP1A From Drug-Resistant Strain 5204 From Streptococcus Pneumoniae, PDB code: 2v2f was solved by V.Job, R.Carapito, T.Vernet, O.Dideberg, A.Dessen, A.Zapun, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.74 / 1.9
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 122.960, 67.030, 49.130, 90.00, 100.89, 90.00
R / Rfree (%) 21 / 24.6

Barium Binding Sites:

The binding sites of Barium atom in the Crystal Structure of PBP1A From Drug-Resistant Strain 5204 From Streptococcus Pneumoniae (pdb code 2v2f). This binding sites where shown within 5.0 Angstroms radius around Barium atom.
In total only one binding site of Barium was determined in the Crystal Structure of PBP1A From Drug-Resistant Strain 5204 From Streptococcus Pneumoniae, PDB code: 2v2f:

Barium binding site 1 out of 1 in 2v2f

Go back to Barium Binding Sites List in 2v2f
Barium binding site 1 out of 1 in the Crystal Structure of PBP1A From Drug-Resistant Strain 5204 From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 1 of Crystal Structure of PBP1A From Drug-Resistant Strain 5204 From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ba1652

b:8.5
occ:1.00
 O F:TYR476 2.7 9.0 1.0
O F:THR364 2.8 4.7 1.0
O F:ASN473 2.8 6.7 1.0
OG F:SER472 2.8 5.9 1.0
O F:HOH2059 2.8 6.1 1.0
OG1 F:THR364 2.9 8.0 1.0
O F:HOH2119 2.9 10.3 1.0
O F:HOH2118 3.0 8.4 1.0
O F:SER472 3.0 5.0 1.0
CB F:THR364 3.6 7.3 1.0
C F:SER472 3.6 7.6 1.0
C F:THR364 3.6 6.5 1.0
C F:ASN473 3.7 8.8 1.0
C F:TYR476 3.8 9.3 1.0
CB F:SER472 4.0 9.3 1.0
CA F:SER472 4.2 9.1 1.0
CA F:THR364 4.3 6.9 1.0
N F:ASN473 4.3 8.1 1.0
OD1 F:ASN468 4.4 13.4 1.0
N F:SER472 4.4 10.0 1.0
N F:LYS474 4.4 6.7 1.0
CA F:LYS474 4.5 9.7 1.0
N F:ASN365 4.6 6.7 1.0
CA F:ASN473 4.6 8.0 1.0
CA F:TYR476 4.6 8.5 1.0
O F:LYS474 4.6 11.7 1.0
N F:TYR476 4.6 10.9 1.0
O F:HOH2123 4.7 9.5 1.0
C F:LYS474 4.7 10.8 1.0
N F:GLY477 4.7 8.1 1.0
CB F:TYR476 4.8 8.7 1.0
CA F:GLY477 4.8 8.8 1.0
CA F:ASN365 4.8 9.0 1.0
O F:HOH2117 4.8 5.3 1.0
CG2 F:THR364 4.9 7.2 1.0

Reference:

V.Job, R.Carapito, T.Vernet, A.Dessen, A.Zapun. Common Alterations in PBP1A From Resistant Streptococcus Pneumoniae Decrease Its Reactivity Toward {Beta}-Lactams: Structural Insights. J.Biol.Chem. V. 283 4886 2008.
ISSN: ISSN 0021-9258
PubMed: 18055459
DOI: 10.1074/JBC.M706181200
Page generated: Sat Dec 12 01:55:26 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy