Atomistry » Barium » PDB 1djh-2x6b » 2v2f
Atomistry »
  Barium »
    PDB 1djh-2x6b »
      2v2f »

Barium in PDB 2v2f: Crystal Structure of PBP1A From Drug-Resistant Strain 5204 From Streptococcus Pneumoniae

Enzymatic activity of Crystal Structure of PBP1A From Drug-Resistant Strain 5204 From Streptococcus Pneumoniae

All present enzymatic activity of Crystal Structure of PBP1A From Drug-Resistant Strain 5204 From Streptococcus Pneumoniae:
2.4.1.129; 3.4.16.4;

Protein crystallography data

The structure of Crystal Structure of PBP1A From Drug-Resistant Strain 5204 From Streptococcus Pneumoniae, PDB code: 2v2f was solved by V.Job, R.Carapito, T.Vernet, O.Dideberg, A.Dessen, A.Zapun, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.74 / 1.9
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 122.960, 67.030, 49.130, 90.00, 100.89, 90.00
R / Rfree (%) 21 / 24.6

Barium Binding Sites:

The binding sites of Barium atom in the Crystal Structure of PBP1A From Drug-Resistant Strain 5204 From Streptococcus Pneumoniae (pdb code 2v2f). This binding sites where shown within 5.0 Angstroms radius around Barium atom.
In total only one binding site of Barium was determined in the Crystal Structure of PBP1A From Drug-Resistant Strain 5204 From Streptococcus Pneumoniae, PDB code: 2v2f:

Barium binding site 1 out of 1 in 2v2f

Go back to Barium Binding Sites List in 2v2f
Barium binding site 1 out of 1 in the Crystal Structure of PBP1A From Drug-Resistant Strain 5204 From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 1 of Crystal Structure of PBP1A From Drug-Resistant Strain 5204 From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ba1652

b:8.5
occ:1.00
 O F:TYR476 2.7 9.0 1.0
O F:THR364 2.8 4.7 1.0
O F:ASN473 2.8 6.7 1.0
OG F:SER472 2.8 5.9 1.0
O F:HOH2059 2.8 6.1 1.0
OG1 F:THR364 2.9 8.0 1.0
O F:HOH2119 2.9 10.3 1.0
O F:HOH2118 3.0 8.4 1.0
O F:SER472 3.0 5.0 1.0
CB F:THR364 3.6 7.3 1.0
C F:SER472 3.6 7.6 1.0
C F:THR364 3.6 6.5 1.0
C F:ASN473 3.7 8.8 1.0
C F:TYR476 3.8 9.3 1.0
CB F:SER472 4.0 9.3 1.0
CA F:SER472 4.2 9.1 1.0
CA F:THR364 4.3 6.9 1.0
N F:ASN473 4.3 8.1 1.0
OD1 F:ASN468 4.4 13.4 1.0
N F:SER472 4.4 10.0 1.0
N F:LYS474 4.4 6.7 1.0
CA F:LYS474 4.5 9.7 1.0
N F:ASN365 4.6 6.7 1.0
CA F:ASN473 4.6 8.0 1.0
CA F:TYR476 4.6 8.5 1.0
O F:LYS474 4.6 11.7 1.0
N F:TYR476 4.6 10.9 1.0
O F:HOH2123 4.7 9.5 1.0
C F:LYS474 4.7 10.8 1.0
N F:GLY477 4.7 8.1 1.0
CB F:TYR476 4.8 8.7 1.0
CA F:GLY477 4.8 8.8 1.0
CA F:ASN365 4.8 9.0 1.0
O F:HOH2117 4.8 5.3 1.0
CG2 F:THR364 4.9 7.2 1.0

Reference:

V.Job, R.Carapito, T.Vernet, A.Dessen, A.Zapun. Common Alterations in PBP1A From Resistant Streptococcus Pneumoniae Decrease Its Reactivity Toward {Beta}-Lactams: Structural Insights. J.Biol.Chem. V. 283 4886 2008.
ISSN: ISSN 0021-9258
PubMed: 18055459
DOI: 10.1074/JBC.M706181200
Page generated: Wed Jul 10 15:06:40 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy