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Barium in PDB 3goj: Barium Bound to the Holliday Sequence D(Ccggcgccgg)4

Protein crystallography data

The structure of Barium Bound to the Holliday Sequence D(Ccggcgccgg)4, PDB code: 3goj was solved by A.Naseer, C.J.Cardin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.62 / 2.60
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 65.243, 24.241, 37.281, 90.00, 110.17, 90.00
R / Rfree (%) 23.6 / 34.7

Barium Binding Sites:

The binding sites of Barium atom in the Barium Bound to the Holliday Sequence D(Ccggcgccgg)4 (pdb code 3goj). This binding sites where shown within 5.0 Angstroms radius around Barium atom.
In total 4 binding sites of Barium where determined in the Barium Bound to the Holliday Sequence D(Ccggcgccgg)4, PDB code: 3goj:
Jump to Barium binding site number: 1; 2; 3; 4;

Barium binding site 1 out of 4 in 3goj

Go back to Barium Binding Sites List in 3goj
Barium binding site 1 out of 4 in the Barium Bound to the Holliday Sequence D(Ccggcgccgg)4


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 1 of Barium Bound to the Holliday Sequence D(Ccggcgccgg)4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba22

b:37.7
occ:0.50
O A:HOH53 2.4 34.3 1.0
O B:HOH27 2.5 18.8 1.0
O6 A:DG4 2.9 18.8 1.0
N7 A:DG3 3.3 19.4 1.0
N4 B:DC17 3.9 19.0 1.0
C8 A:DG3 3.9 19.3 1.0
C6 A:DG4 4.0 16.6 1.0
C5 A:DG3 4.2 18.9 1.0
N7 A:DG4 4.3 17.0 1.0
O B:HOH43 4.5 19.5 1.0
C5 A:DG4 4.5 16.3 1.0
O6 A:DG3 4.5 18.9 1.0
C6 A:DG3 4.7 18.4 1.0
O A:HOH44 4.7 9.4 1.0
O6 B:DG16 4.9 19.7 1.0
N7 B:DG16 4.9 21.0 1.0
N9 A:DG3 5.0 20.6 1.0

Barium binding site 2 out of 4 in 3goj

Go back to Barium Binding Sites List in 3goj
Barium binding site 2 out of 4 in the Barium Bound to the Holliday Sequence D(Ccggcgccgg)4


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 2 of Barium Bound to the Holliday Sequence D(Ccggcgccgg)4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba29

b:44.7
occ:0.50
N4 A:DC7 3.8 12.2 1.0

Barium binding site 3 out of 4 in 3goj

Go back to Barium Binding Sites List in 3goj
Barium binding site 3 out of 4 in the Barium Bound to the Holliday Sequence D(Ccggcgccgg)4


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 3 of Barium Bound to the Holliday Sequence D(Ccggcgccgg)4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba32

b:46.7
occ:0.50
O A:HOH40 2.4 35.1 1.0
N2 A:DG10 4.3 18.8 1.0
O A:HOH33 4.3 19.4 1.0
N2 A:DG9 4.6 19.6 1.0
N3 A:DG10 4.6 19.1 1.0
C2 A:DG10 4.9 18.6 1.0

Barium binding site 4 out of 4 in 3goj

Go back to Barium Binding Sites List in 3goj
Barium binding site 4 out of 4 in the Barium Bound to the Holliday Sequence D(Ccggcgccgg)4


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 4 of Barium Bound to the Holliday Sequence D(Ccggcgccgg)4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ba23

b:41.6
occ:0.40
O B:HOH39 2.5 23.6 1.0
O A:HOH26 3.0 22.6 1.0
O4' B:DG20 4.3 19.4 1.0
C4' B:DG20 4.6 20.9 1.0
O B:HOH37 4.6 17.6 1.0
O B:HOH34 4.7 20.2 1.0
N2 A:DG3 4.7 19.1 1.0
N2 B:DG19 4.8 21.3 1.0

Reference:

A.Naseer, C.J.Cardin. Barium Bound to the Holliday Junction Structure To Be Published.
Page generated: Tue Oct 27 17:00:42 2020

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