Chemical elements
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    Detection of Barrium
    PDB 1djh-3iqp
    PDB 3iqr-4e7y
      3iqr
      3lr4
      3nkv
      3ns4
      3oxj
      3p4b
      3s80
      3u38
      3v61
      3vg5
      3vg6
      439d
      4aeb
      4aob
      4e1u
      4e7y

Barium in the structure of Alternatingly Modified 2'Fluoro Rna Octamer F/RA2U2-P3 (pdb 3p4b)






The binding sites of Barium atom in the structure of Alternatingly Modified 2'Fluoro Rna Octamer F/RA2U2-P3 (pdb code 3p4b). This binding sites where shown with 5.0 Angstroms radius around Barium atom.
The 3p4b structure was solved by P.S.PALLAN, E.M.GREENE, P.A.JICMAN, R.K.PANDEY, M.MANOHARAN, E.ROZNERS, M.EGLI, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)21.7-1.4
Space groupP3
a (A)43.383
b (A)43.383
c (A)60.987
alpha (°)90.00
beta (°)90.00
gamma (°)120.00
Rfactor (%)19.7
Rfree (%)25.1


Barium Binding Sites:

Barium binding site 1 out of 2 in 3p4b


Barium binding site 1 out of 2 in 3p4b
Click to enlarge
stereopicture of Barium binding site 1 out of 2 in 3p4b
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Barium in the PDB 3p4b. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Barium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: A104, A: Uft105, A: U106, B: A204, A: Hoh721, A: Hoh729, A: Hoh775, A: Hoh824,

conact list:


AtomAtomDistance (A)
BaN6 A:A1044.72
BaN7 A:A1044.83
BaC5 A:Uft1054.65
BaC4 A:Uft1054.20
BaO4 A:Uft1053.00
BaO4 A:U1064.84
BaN6 B:A2044.48
BaO A:Hoh7214.68
BaO A:Hoh7292.80
BaO A:Hoh7752.49
BaO A:Hoh8244.84

interactive model:


Barium binding site 2 out of 2 in 3p4b


Barium binding site 2 out of 2 in 3p4b
Click to enlarge
stereopicture of Barium binding site 2 out of 2 in 3p4b
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Barium in the PDB 3p4b. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Barium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: A304, D: A404, D: Uft405, D: U406, C: Hoh726, D: Hoh731, D: Hoh734, D: Hoh825,

conact list:


AtomAtomDistance (A)
BaN6 C:A3044.48
BaN6 D:A4044.73
BaN7 D:A4044.83
BaC5 D:Uft4054.65
BaC4 D:Uft4054.19
BaO4 D:Uft4053.01
BaO4 D:U4064.87
BaO C:Hoh7264.99
BaO D:Hoh7314.56
BaO D:Hoh7342.76
BaO D:Hoh8252.52

interactive model:




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