Chemical elements
  Barium
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    Detection of Barrium
    PDB 1djh-3iqp
    PDB 3iqr-4e7y
      3iqr
      3lr4
      3nkv
      3ns4
      3oxj
      3p4b
      3s80
      3u38
      3v61
      3vg5
      3vg6
      439d
      4aeb
      4aob
      4e1u
      4e7y

Barium in the structure of 5'-R(*Cp*Up*Gp*Gp*Gp*Cp*Gp*G)-3', 5'- R(*Cp*Cp*Gp*Cp*Cp*Up*Gp*G)-3' (pdb 439d)






The binding sites of Barium atom in the structure of 5'-R(*Cp*Up*Gp*Gp*Gp*Cp*Gp*G)-3', 5'- R(*Cp*Cp*Gp*Cp*Cp*Up*Gp*G)-3' (pdb code 439d). This binding sites where shown with 5.0 Angstroms radius around Barium atom.
The 439d structure was solved by M.PERBANDT, S.LORENZ, M.VALLAZZA, V.A.ERDMANN, C.BETZEL, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)15.0-1.6
Space groupH32
a (A)41.969
b (A)41.969
c (A)127.137
alpha (°)90.00
beta (°)90.00
gamma (°)120.00
Rfactor (%)22.4
Rfree (%)27.1


Barium Binding Sites:

Barium binding site 1 out of 1 in 439d


Barium binding site 1 out of 1 in 439d
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stereopicture of Barium binding site 1 out of 1 in 439d
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Barium in the PDB 439d. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Barium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G81, A: G82, A: G83, B: C94, A: Hoh1, A: Hoh12, A: Hoh13, A: Hoh14, A: Hoh60, B: Hoh20,

conact list:


AtomAtomDistance (A)
BaC8 A:G814.34
BaC6 A:G814.50
BaC5 A:G814.24
BaN7 A:G813.61
BaOP2 A:G814.96
BaO6 A:G814.11
BaN9 A:G824.99
BaC8 A:G823.91
BaC6 A:G823.56
BaN1 A:G824.97
BaC5 A:G823.48
BaN7 A:G822.75
BaC4 A:G824.79
BaO6 A:G822.93
BaN7 A:G834.98
BaO6 A:G834.70
BaN4 B:C944.85
BaO A:Hoh13.34
BaO A:Hoh122.62
BaO A:Hoh132.74
BaO A:Hoh144.98
BaO A:Hoh603.02
BaO B:Hoh203.50

interactive model:




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