Atomistry » Barium » PDB 2y5y-4e60 » 4e2r
Atomistry »
  Barium »
    PDB 2y5y-4e60 »
      4e2r »

Barium in PDB 4e2r: Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex

Protein crystallography data

The structure of Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex, PDB code: 4e2r was solved by P.K.Mandal, S.Venkadesh, N.Gautham, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.11 / 1.67
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 17.544, 30.512, 44.210, 90.00, 90.00, 90.00
R / Rfree (%) 18.7 / 22.7

Barium Binding Sites:

The binding sites of Barium atom in the Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex (pdb code 4e2r). This binding sites where shown within 5.0 Angstroms radius around Barium atom.
In total 2 binding sites of Barium where determined in the Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex, PDB code: 4e2r:
Jump to Barium binding site number: 1; 2;

Barium binding site 1 out of 2 in 4e2r

Go back to Barium Binding Sites List in 4e2r
Barium binding site 1 out of 2 in the Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 1 of Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba101

b:23.3
occ:0.85
BA A:BA101 0.0 23.3 0.8
BA A:BA101 1.4 11.0 0.1
O A:HOH214 2.4 32.9 1.0
OP1 A:DC3 2.7 16.9 1.0
O6 A:DG4 2.8 19.1 1.0
N7 A:DG4 3.0 17.9 1.0
O B:HOH112 3.3 24.2 1.0
C6 A:DG4 3.5 18.3 1.0
C5 A:DG4 3.6 17.9 1.0
P A:DC3 4.1 18.2 1.0
C8 A:DG4 4.2 17.6 1.0
OP2 A:DC3 4.5 18.6 1.0
N4 B:DC9 4.7 19.7 1.0
C6 A:DC3 4.8 10.3 1.0
N1 A:DG4 4.8 19.4 1.0
C4 A:DG4 4.9 18.5 1.0
C5 A:DC3 4.9 11.3 1.0
O6 B:DG8 5.0 18.8 1.0
C2' A:DA2 5.0 15.0 1.0

Barium binding site 2 out of 2 in 4e2r

Go back to Barium Binding Sites List in 4e2r
Barium binding site 2 out of 2 in the Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 2 of Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba101

b:11.0
occ:0.15
BA A:BA101 0.0 11.0 0.1
BA A:BA101 1.4 23.3 0.8
O A:HOH214 2.1 32.9 1.0
N7 A:DG4 3.7 17.9 1.0
OP1 A:DC3 3.8 16.9 1.0
O6 A:DG4 4.0 19.1 1.0
O B:HOH112 4.1 24.2 1.0
C5 A:DG4 4.6 17.9 1.0
C6 A:DG4 4.7 18.3 1.0
C8 A:DG4 4.8 17.6 1.0
P A:DC3 4.9 18.2 1.0
OP2 A:DC3 5.0 18.6 1.0

Reference:

P.K.Mandal, S.Venkadesh, N.Gautham. Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex To Be Published.
Page generated: Sat Dec 12 01:56:07 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy