Atomistry » Barium » PDB 2y5y-4e60 » 4e4o
Atomistry »
  Barium »
    PDB 2y5y-4e60 »
      4e4o »

Barium in PDB 4e4o: Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex

Protein crystallography data

The structure of Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex, PDB code: 4e4o was solved by P.K.Mandal, S.Venkadesh, N.Gautham, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.53 / 1.72
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 24.055, 31.011, 31.368, 90.00, 102.00, 90.00
R / Rfree (%) 20.1 / 25.7

Barium Binding Sites:

The binding sites of Barium atom in the Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex (pdb code 4e4o). This binding sites where shown within 5.0 Angstroms radius around Barium atom.
In total only one binding site of Barium was determined in the Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex, PDB code: 4e4o:

Barium binding site 1 out of 1 in 4e4o

Go back to Barium Binding Sites List in 4e4o
Barium binding site 1 out of 1 in the Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 1 of Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba101

b:15.9
occ:0.33
O C:HOH105 2.2 21.1 1.0
N7 A:DA2 2.4 11.4 1.0
N7 C:DG4 2.4 12.6 1.0
O C:HOH101 2.5 21.1 1.0
O A:HOH202 2.6 19.4 1.0
C8 A:DA2 3.2 12.8 1.0
C8 C:DG4 3.2 10.3 1.0
C5 A:DA2 3.5 11.7 1.0
C5 C:DG4 3.6 10.8 1.0
N6 A:DA2 3.9 12.8 1.0
O6 C:DG4 4.0 14.2 1.0
O C:HOH111 4.0 32.1 1.0
OP2 C:DC3 4.1 15.9 0.6
C6 C:DG4 4.2 11.0 1.0
C6 A:DA2 4.2 11.5 1.0
OP1 C:DC3 4.3 14.8 0.6
N9 A:DA2 4.4 10.2 1.0
N9 C:DG4 4.4 13.7 1.0
C4 A:DA2 4.6 12.0 1.0
P C:DC3 4.6 13.9 0.6
OP1 C:DC3 4.6 19.8 0.4
C4 C:DG4 4.6 12.3 1.0
O D:HOH106 4.7 27.1 1.0
C5' A:DC1 4.7 13.3 1.0
O5' A:DC1 4.7 16.5 1.0
C5' C:DC3 4.9 14.9 1.0

Reference:

P.K.Mandal, S.Venkadesh, N.Gautham. Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex To Be Published.
Page generated: Wed Jul 10 15:21:14 2024

Last articles

Zn in 9FD2
Zn in 9GUW
Zn in 9GUX
Zn in 9F7C
Zn in 9GUR
Zn in 9F7A
Zn in 9DDE
Zn in 9DBY
Zn in 9EBZ
Zn in 9DGG
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy