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Barium in PDB 4e60: Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex

Protein crystallography data

The structure of Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex, PDB code: 4e60 was solved by P.K.Mandal, S.Venkadesh, N.Gautham, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.11 / 1.86
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 35.177, 35.177, 44.341, 90.00, 90.00, 120.00
R / Rfree (%) 21.5 / 23.1

Barium Binding Sites:

The binding sites of Barium atom in the Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex (pdb code 4e60). This binding sites where shown within 5.0 Angstroms radius around Barium atom.
In total 2 binding sites of Barium where determined in the Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex, PDB code: 4e60:
Jump to Barium binding site number: 1; 2;

Barium binding site 1 out of 2 in 4e60

Go back to Barium Binding Sites List in 4e60
Barium binding site 1 out of 2 in the Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 1 of Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ba101

b:36.2
occ:0.70
BA D:BA101 0.0 36.2 0.7
BA D:BA101 1.9 24.0 0.3
O6 A:DG4 3.1 16.6 1.0
N7 A:DG4 3.2 18.9 1.0
C6 A:DG4 3.8 15.6 1.0
C5 A:DG4 3.9 17.4 1.0
N7 D:DG16 4.0 10.3 1.0
O6 D:DG16 4.1 16.7 1.0
C8 A:DG4 4.4 19.2 1.0
C5 D:DG16 4.7 11.5 1.0
C6 D:DG16 4.8 11.9 1.0
C8 D:DG16 4.9 9.0 1.0
O6 B:DG8 5.0 13.4 1.0
N4 B:DC9 5.0 16.4 1.0

Barium binding site 2 out of 2 in 4e60

Go back to Barium Binding Sites List in 4e60
Barium binding site 2 out of 2 in the Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 2 of Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ba101

b:24.0
occ:0.30
BA D:BA101 0.0 24.0 0.3
BA D:BA101 1.9 36.2 0.7
O6 D:DG16 2.6 16.7 1.0
N7 D:DG16 2.9 10.3 1.0
C6 D:DG16 3.3 11.9 1.0
C5 D:DG16 3.4 11.5 1.0
C7 D:DT15 4.0 7.6 0.2
C8 D:DG16 4.0 9.0 1.0
N7 A:DG4 4.2 18.9 1.0
O6 A:DG4 4.5 16.6 1.0
O4 C:DT13 4.6 11.4 1.0
C6 D:DT15 4.6 5.7 1.0
N1 D:DG16 4.7 13.6 1.0
O5' D:DT15 4.7 12.9 1.0
C4 D:DG16 4.7 6.9 1.0
C5 D:DT15 4.7 7.3 1.0
C5' D:DT15 4.9 3.1 1.0

Reference:

P.K.Mandal, S.Venkadesh, N.Gautham. Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex To Be Published.
Page generated: Wed Jul 10 15:21:48 2024

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