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Barium in PDB 4ly2: X-Ray Crystal Structure of the Ruthenium Complex [Ru(Phen)2(Dppz)]2+ Bound to D(Tcggtaccga)

Protein crystallography data

The structure of X-Ray Crystal Structure of the Ruthenium Complex [Ru(Phen)2(Dppz)]2+ Bound to D(Tcggtaccga), PDB code: 4ly2 was solved by H Niyazi, S Teixeira, E Mitchell, T Forsyth, C Cardin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.09 / 2.10
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 52.450, 52.450, 32.580, 90.00, 90.00, 90.00
R / Rfree (%) 18.8 / 21.9

Other elements in 4ly2:

The structure of X-Ray Crystal Structure of the Ruthenium Complex [Ru(Phen)2(Dppz)]2+ Bound to D(Tcggtaccga) also contains other interesting chemical elements:

Ruthenium (Ru) 2 atoms

Barium Binding Sites:

The binding sites of Barium atom in the X-Ray Crystal Structure of the Ruthenium Complex [Ru(Phen)2(Dppz)]2+ Bound to D(Tcggtaccga) (pdb code 4ly2). This binding sites where shown within 5.0 Angstroms radius around Barium atom.
In total only one binding site of Barium was determined in the X-Ray Crystal Structure of the Ruthenium Complex [Ru(Phen)2(Dppz)]2+ Bound to D(Tcggtaccga), PDB code: 4ly2:

Barium binding site 1 out of 1 in 4ly2

Go back to Barium Binding Sites List in 4ly2
Barium binding site 1 out of 1 in the X-Ray Crystal Structure of the Ruthenium Complex [Ru(Phen)2(Dppz)]2+ Bound to D(Tcggtaccga)


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 1 of X-Ray Crystal Structure of the Ruthenium Complex [Ru(Phen)2(Dppz)]2+ Bound to D(Tcggtaccga) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba103

b:33.3
occ:1.00
O A:HOH218 2.2 43.3 1.0
O A:HOH211 2.4 44.2 1.0
O A:HOH210 2.8 38.1 1.0
O6 A:DG4 2.9 29.2 1.0
N7 A:DG3 2.9 30.1 1.0
O A:HOH212 3.0 42.5 1.0
O4 A:DT5 3.0 34.8 1.0
N7 A:DG4 3.0 30.9 1.0
O A:HOH213 3.0 34.3 1.0
C6 A:DG4 3.6 28.2 1.0
C5 A:DG4 3.6 28.4 1.0
C8 A:DG3 3.6 28.9 1.0
C4 A:DT5 3.9 32.0 1.0
C5 A:DG3 4.1 29.5 1.0
C8 A:DG4 4.2 26.3 1.0
C7 A:DT5 4.5 31.3 1.0
O6 A:DG3 4.5 26.5 1.0
OP2 A:DG3 4.6 47.0 1.0
C5 A:DT5 4.6 29.9 1.0
C6 A:DG3 4.7 29.5 1.0
O A:HOH220 4.8 48.8 1.0
N3 A:DT5 4.8 34.3 1.0
O A:HOH201 4.8 40.6 1.0
N9 A:DG3 4.9 27.8 1.0
N1 A:DG4 4.9 26.0 1.0
C4 A:DG4 4.9 26.8 1.0

Reference:

H Niyazi, S Teixeira, E Mitchell, T Forsyth, C Cardin. X-Ray Crystal Structure of the Ruthenium Complex [Ru(Phen)2(Dppz)]2+ Bound to D(Tcggtaccga) To Be Published.
Page generated: Sat Dec 12 01:56:48 2020

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