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Barium in PDB 5e1j: Structure of Voltage-Gated Two-Pore Channel TPC1 From Arabidopsis Thaliana

Protein crystallography data

The structure of Structure of Voltage-Gated Two-Pore Channel TPC1 From Arabidopsis Thaliana, PDB code: 5e1j was solved by J.Guo, W.Zeng, Q.Chen, C.Lee, L.Chen, Y.Yang, Y.Jiang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.71 / 3.31
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 88.430, 158.850, 217.240, 90.00, 90.00, 90.00
R / Rfree (%) 32.5 / 33.2

Other elements in 5e1j:

The structure of Structure of Voltage-Gated Two-Pore Channel TPC1 From Arabidopsis Thaliana also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Barium Binding Sites:

The binding sites of Barium atom in the Structure of Voltage-Gated Two-Pore Channel TPC1 From Arabidopsis Thaliana (pdb code 5e1j). This binding sites where shown within 5.0 Angstroms radius around Barium atom.
In total 9 binding sites of Barium where determined in the Structure of Voltage-Gated Two-Pore Channel TPC1 From Arabidopsis Thaliana, PDB code: 5e1j:
Jump to Barium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Barium binding site 1 out of 9 in 5e1j

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Barium binding site 1 out of 9 in the Structure of Voltage-Gated Two-Pore Channel TPC1 From Arabidopsis Thaliana


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Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 1 of Structure of Voltage-Gated Two-Pore Channel TPC1 From Arabidopsis Thaliana within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba801

b:0.7
occ:0.39
 OE1 A:GLU605 2.8 83.8 1.0
CD A:GLU605 3.9 83.2 1.0
OE2 A:GLU605 4.6 82.9 1.0
CG A:GLU605 4.8 82.8 1.0

Barium binding site 2 out of 9 in 5e1j

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Barium binding site 2 out of 9 in the Structure of Voltage-Gated Two-Pore Channel TPC1 From Arabidopsis Thaliana


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Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 2 of Structure of Voltage-Gated Two-Pore Channel TPC1 From Arabidopsis Thaliana within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba802

b:0.0
occ:1.00
 CD2 A:LEU245 4.2 98.4 1.0
CD1 A:LEU245 4.4 0.7 1.0
CG A:LEU245 5.0 100.0 1.0

Barium binding site 3 out of 9 in 5e1j

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Barium binding site 3 out of 9 in the Structure of Voltage-Gated Two-Pore Channel TPC1 From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 3 of Structure of Voltage-Gated Two-Pore Channel TPC1 From Arabidopsis Thaliana within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba803

b:72.3
occ:0.42
 BA A:BA803 0.0 72.3 0.4
O A:HOH904 2.7 64.8 0.5
O A:HOH903 3.0 53.5 1.0
BA A:BA803 3.2 72.3 0.3
O A:HOH902 3.5 43.8 1.0

Barium binding site 4 out of 9 in 5e1j

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Barium binding site 4 out of 9 in the Structure of Voltage-Gated Two-Pore Channel TPC1 From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 4 of Structure of Voltage-Gated Two-Pore Channel TPC1 From Arabidopsis Thaliana within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba803

b:72.3
occ:0.28
 BA A:BA803 0.0 72.3 0.3
O A:HOH902 2.7 43.8 1.0
O A:HOH901 2.8 55.1 1.0
BA A:BA803 3.2 72.3 0.4
O A:HOH903 4.4 53.5 1.0
CE A:MET629 4.8 50.7 1.0

Barium binding site 5 out of 9 in 5e1j

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Barium binding site 5 out of 9 in the Structure of Voltage-Gated Two-Pore Channel TPC1 From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 5 of Structure of Voltage-Gated Two-Pore Channel TPC1 From Arabidopsis Thaliana within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba804

b:88.6
occ:1.00
 OE2 A:GLU457 2.8 0.1 1.0
CD A:GLU457 3.9 0.5 1.0
OE1 A:GLU457 4.4 0.4 1.0
O A:ILE455 4.4 95.3 1.0

Barium binding site 6 out of 9 in 5e1j

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Barium binding site 6 out of 9 in the Structure of Voltage-Gated Two-Pore Channel TPC1 From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 6 of Structure of Voltage-Gated Two-Pore Channel TPC1 From Arabidopsis Thaliana within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba805

b:97.7
occ:0.98
 OD1 A:ASP454 2.8 96.2 1.0
OD2 A:ASP454 2.8 97.5 1.0
OE1 A:GLU528 2.8 0.9 1.0
CG A:ASP454 3.1 96.7 1.0
CD A:GLU528 3.7 1.0 1.0
OE2 A:GLU528 3.9 0.3 1.0
CB A:ASP454 4.7 96.2 1.0
NE2 A:GLN461 4.7 0.1 1.0
O A:ASP454 4.7 96.9 1.0
OG A:SER525 4.8 0.2 1.0

Barium binding site 7 out of 9 in 5e1j

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Barium binding site 7 out of 9 in the Structure of Voltage-Gated Two-Pore Channel TPC1 From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 7 of Structure of Voltage-Gated Two-Pore Channel TPC1 From Arabidopsis Thaliana within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba806

b:0.4
occ:1.00
 O A:ASN339 3.6 0.2 1.0
C A:ASN339 4.8 0.6 1.0

Barium binding site 8 out of 9 in 5e1j

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Barium binding site 8 out of 9 in the Structure of Voltage-Gated Two-Pore Channel TPC1 From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 8 of Structure of Voltage-Gated Two-Pore Channel TPC1 From Arabidopsis Thaliana within 5.0Å range:

Barium binding site 9 out of 9 in 5e1j

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Barium binding site 9 out of 9 in the Structure of Voltage-Gated Two-Pore Channel TPC1 From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 9 of Structure of Voltage-Gated Two-Pore Channel TPC1 From Arabidopsis Thaliana within 5.0Å range:

Reference:

J.Guo, W.Zeng, Q.Chen, C.Lee, L.Chen, Y.Yang, C.Cang, D.Ren, Y.Jiang. Structure of the Voltage-Gated Two-Pore Channel TPC1 From Arabidopsis Thaliana. Nature V. 531 196 2016.
ISSN: ESSN 1476-4687
PubMed: 26689363
DOI: 10.1038/NATURE16446
Page generated: Wed Jul 10 15:37:38 2024

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