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Barium in PDB 5et9: Racemic Crystal Structures of Pribnow Box Consensus Promoter Sequence (P21/N)

Protein crystallography data

The structure of Racemic Crystal Structures of Pribnow Box Consensus Promoter Sequence (P21/N), PDB code: 5et9 was solved by P.K.Mandal, G.W.Collie, B.Kauffmann, S.C.Srivastava, I.Huc, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.14 / 1.83
Space group P 1 21/n 1
Cell size a, b, c (Å), α, β, γ (°) 28.786, 68.288, 34.213, 90.00, 90.05, 90.00
R / Rfree (%) 29.8 / 32.9

Barium Binding Sites:

The binding sites of Barium atom in the Racemic Crystal Structures of Pribnow Box Consensus Promoter Sequence (P21/N) (pdb code 5et9). This binding sites where shown within 5.0 Angstroms radius around Barium atom.
In total 2 binding sites of Barium where determined in the Racemic Crystal Structures of Pribnow Box Consensus Promoter Sequence (P21/N), PDB code: 5et9:
Jump to Barium binding site number: 1; 2;

Barium binding site 1 out of 2 in 5et9

Go back to Barium Binding Sites List in 5et9
Barium binding site 1 out of 2 in the Racemic Crystal Structures of Pribnow Box Consensus Promoter Sequence (P21/N)


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 1 of Racemic Crystal Structures of Pribnow Box Consensus Promoter Sequence (P21/N) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba101

b:45.6
occ:0.37
O A:HOH201 2.9 44.5 1.0
OP2 A:DC3 3.1 46.0 1.0
P A:DC3 3.9 44.2 1.0
OP1 A:DC3 3.9 50.6 1.0
O A:HOH202 4.7 36.3 1.0
O3' A:DG2 4.8 38.4 1.0

Barium binding site 2 out of 2 in 5et9

Go back to Barium Binding Sites List in 5et9
Barium binding site 2 out of 2 in the Racemic Crystal Structures of Pribnow Box Consensus Promoter Sequence (P21/N)


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 2 of Racemic Crystal Structures of Pribnow Box Consensus Promoter Sequence (P21/N) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ba101

b:42.5
occ:0.32
O B:HOH206 2.6 62.0 1.0
N7 B:DG10 2.8 55.9 1.0
O B:HOH205 2.9 46.4 1.0
O6 B:DG10 3.0 49.1 1.0
C5 B:DG10 3.4 45.8 1.0
C6 B:DG10 3.5 42.8 1.0
C8 B:DG10 3.9 59.3 1.0
N7 B:DA9 4.2 63.3 1.0
N4 B:DC11 4.5 53.7 1.0
O6 A:DG2 4.5 37.0 1.0
C8 B:DA9 4.7 76.6 1.0
C4 B:DG10 4.7 52.3 1.0
C5 B:DA9 4.7 48.9 1.0
N1 B:DG10 4.9 41.4 1.0
N9 B:DG10 4.9 57.9 1.0
N6 B:DA9 5.0 50.3 1.0

Reference:

P.K.Mandal, G.W.Collie, S.C.Srivastava, B.Kauffmann, I.Huc. Structure Elucidation of the Pribnow Box Consensus Promoter Sequence By Racemic Dna Crystallography. Nucleic Acids Res. V. 44 5936 2016.
ISSN: ESSN 1362-4962
PubMed: 27137886
DOI: 10.1093/NAR/GKW367
Page generated: Wed Jul 10 15:37:59 2024

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