Atomistry » Barium » PDB 4x1a-5wkx » 5ew7
Atomistry »
  Barium »
    PDB 4x1a-5wkx »
      5ew7 »

Barium in PDB 5ew7: Crystal Structure of C9ORF72 Antisense Ccccgg Repeat Rna Associated with Lou Gehrig'S Disease and Frontotemporal Dementia, Crystallized with BA2+

Protein crystallography data

The structure of Crystal Structure of C9ORF72 Antisense Ccccgg Repeat Rna Associated with Lou Gehrig'S Disease and Frontotemporal Dementia, Crystallized with BA2+, PDB code: 5ew7 was solved by D.R.Tomchick, D.W.Dodd, K.T.Gagnon, D.R.Corey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.20 / 1.75
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 41.134, 47.659, 59.495, 90.00, 90.00, 90.00
R / Rfree (%) 23.5 / 25.8

Other elements in 5ew7:

The structure of Crystal Structure of C9ORF72 Antisense Ccccgg Repeat Rna Associated with Lou Gehrig'S Disease and Frontotemporal Dementia, Crystallized with BA2+ also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms
Potassium (K) 4 atoms

Barium Binding Sites:

The binding sites of Barium atom in the Crystal Structure of C9ORF72 Antisense Ccccgg Repeat Rna Associated with Lou Gehrig'S Disease and Frontotemporal Dementia, Crystallized with BA2+ (pdb code 5ew7). This binding sites where shown within 5.0 Angstroms radius around Barium atom.
In total only one binding site of Barium was determined in the Crystal Structure of C9ORF72 Antisense Ccccgg Repeat Rna Associated with Lou Gehrig'S Disease and Frontotemporal Dementia, Crystallized with BA2+, PDB code: 5ew7:

Barium binding site 1 out of 1 in 5ew7

Go back to Barium Binding Sites List in 5ew7
Barium binding site 1 out of 1 in the Crystal Structure of C9ORF72 Antisense Ccccgg Repeat Rna Associated with Lou Gehrig'S Disease and Frontotemporal Dementia, Crystallized with BA2+


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 1 of Crystal Structure of C9ORF72 Antisense Ccccgg Repeat Rna Associated with Lou Gehrig'S Disease and Frontotemporal Dementia, Crystallized with BA2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ba101

b:22.6
occ:0.71
O2 B:C16 2.4 15.9 1.0
O A:HOH240 2.7 15.3 1.0
O B:HOH208 2.8 31.5 1.0
C2 B:C16 3.5 15.6 1.0
N3 B:C16 4.0 16.4 1.0
H1' A:C10 4.1 17.2 1.0
H1' B:C16 4.2 19.8 1.0
H1' B:G17 4.3 16.9 1.0
H2' B:C16 4.5 21.2 1.0
N1 B:C16 4.6 15.4 1.0
O4' B:G17 4.7 13.5 1.0
C1' B:C16 4.8 16.5 1.0
O B:HOH242 4.8 20.2 1.0
O2' A:C10 4.8 15.2 1.0
C1' B:G17 4.9 14.1 1.0
C2' B:C16 5.0 17.7 1.0
O2' B:C16 5.0 18.7 1.0

Reference:

D.W.Dodd, D.R.Tomchick, D.R.Corey, K.T.Gagnon. Pathogenic C9ORF72 Antisense Repeat Rna Forms A Double Helix with Tandem C:C Mismatches. Biochemistry V. 55 1283 2016.
ISSN: ISSN 0006-2960
PubMed: 26878348
DOI: 10.1021/ACS.BIOCHEM.6B00136
Page generated: Wed Jul 10 15:38:12 2024

Last articles

Ca in 8A2Z
Ca in 8A2Y
Ca in 8A2U
Ca in 8A0L
Ca in 8A0B
Ca in 7ZZW
Ca in 830C
Ca in 7ZZU
Ca in 7ZZT
Ca in 7ZZS
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy