Atomistry » Barium » PDB 4x1a-5wkx » 5ip8
Atomistry »
  Barium »
    PDB 4x1a-5wkx »
      5ip8 »

Barium in PDB 5ip8: Lambda-Ru(Tap)2DPPZ Bound to D(Ccggctccgg)

Protein crystallography data

The structure of Lambda-Ru(Tap)2DPPZ Bound to D(Ccggctccgg), PDB code: 5ip8 was solved by J.E.Souter, J.P.Hall, C.J.Cardin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.73 / 1.76
Space group P 43
Cell size a, b, c (Å), α, β, γ (°) 47.450, 47.450, 35.130, 90.00, 90.00, 90.00
R / Rfree (%) 18.8 / 22

Other elements in 5ip8:

The structure of Lambda-Ru(Tap)2DPPZ Bound to D(Ccggctccgg) also contains other interesting chemical elements:

Ruthenium (Ru) 2 atoms

Barium Binding Sites:

The binding sites of Barium atom in the Lambda-Ru(Tap)2DPPZ Bound to D(Ccggctccgg) (pdb code 5ip8). This binding sites where shown within 5.0 Angstroms radius around Barium atom.
In total 2 binding sites of Barium where determined in the Lambda-Ru(Tap)2DPPZ Bound to D(Ccggctccgg), PDB code: 5ip8:
Jump to Barium binding site number: 1; 2;

Barium binding site 1 out of 2 in 5ip8

Go back to Barium Binding Sites List in 5ip8
Barium binding site 1 out of 2 in the Lambda-Ru(Tap)2DPPZ Bound to D(Ccggctccgg)


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 1 of Lambda-Ru(Tap)2DPPZ Bound to D(Ccggctccgg) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ba101

b:40.6
occ:1.00
O B:HOH219 2.7 39.6 1.0
O B:HOH222 2.8 43.4 1.0
O B:HOH207 2.8 41.4 1.0
O B:HOH215 2.8 40.3 1.0
O6 B:DG4 2.8 39.9 1.0
O A:HOH202 2.9 40.1 1.0
O B:HOH239 2.9 41.0 1.0
N7 B:DG3 3.0 39.0 1.0
N7 B:DG4 3.1 40.4 1.0
C6 B:DG4 3.6 37.2 1.0
C5 B:DG4 3.7 36.3 1.0
C8 B:DG3 3.7 37.9 1.0
C5 B:DG3 4.2 37.0 1.0
C8 B:DG4 4.3 37.4 1.0
O6 B:DG3 4.5 35.9 1.0
C6 B:DG3 4.7 35.4 1.0
OP2 B:DG3 4.7 44.4 1.0
O4 A:DT6 4.9 51.4 1.0
O A:HOH222 4.9 50.0 1.0
N1 B:DG4 4.9 38.6 1.0

Barium binding site 2 out of 2 in 5ip8

Go back to Barium Binding Sites List in 5ip8
Barium binding site 2 out of 2 in the Lambda-Ru(Tap)2DPPZ Bound to D(Ccggctccgg)


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 2 of Lambda-Ru(Tap)2DPPZ Bound to D(Ccggctccgg) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba101

b:40.1
occ:1.00
O A:HOH210 2.6 42.9 1.0
O A:HOH203 2.7 41.4 1.0
O A:HOH213 2.7 40.5 1.0
O A:HOH217 2.7 46.5 1.0
O B:HOH205 2.8 40.2 1.0
O6 A:DG4 2.9 40.8 1.0
O A:HOH229 2.9 43.9 1.0
N7 A:DG3 3.0 39.7 1.0
N7 A:DG4 3.1 40.3 1.0
C6 A:DG4 3.6 36.8 1.0
C8 A:DG3 3.7 35.3 1.0
C5 A:DG4 3.7 36.1 1.0
C5 A:DG3 4.2 36.1 1.0
C8 A:DG4 4.3 40.9 1.0
O6 A:DG3 4.5 37.6 1.0
OP2 A:DG3 4.7 43.3 1.0
C6 A:DG3 4.7 34.5 1.0
O A:HOH227 4.7 50.2 1.0
O6 B:DG6 4.9 46.2 1.0
N1 A:DG4 5.0 39.7 1.0
N4 B:DC7 5.0 44.8 1.0
N9 A:DG3 5.0 40.8 1.0

Reference:

J.P.Hall, J.E.Souter, S.P.Gurung, C.J.Cardin. Sequence Specific Binding of Light Activated Ru-Polypyridyls To Be Published.
Page generated: Sat Dec 12 01:57:32 2020

Last articles

Zn in 8PFC
Zn in 8SF0
Zn in 8SOJ
Zn in 8SOK
Zn in 8SYI
Zn in 8SLG
Zn in 8SEX
Zn in 8SEZ
Zn in 8SJG
Zn in 8SEY
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy