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Barium in PDB 5ms7: Crystal Structure of the Legionella Pneumophila Effector Protein RAVZ_20-502

Protein crystallography data

The structure of Crystal Structure of the Legionella Pneumophila Effector Protein RAVZ_20-502, PDB code: 5ms7 was solved by S.Pantoom, I.R.Vetter, Y.W.Wu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.15 / 2.80
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 222.770, 222.770, 72.940, 90.00, 90.00, 90.00
R / Rfree (%) 20.7 / 25.4

Barium Binding Sites:

The binding sites of Barium atom in the Crystal Structure of the Legionella Pneumophila Effector Protein RAVZ_20-502 (pdb code 5ms7). This binding sites where shown within 5.0 Angstroms radius around Barium atom.
In total 2 binding sites of Barium where determined in the Crystal Structure of the Legionella Pneumophila Effector Protein RAVZ_20-502, PDB code: 5ms7:
Jump to Barium binding site number: 1; 2;

Barium binding site 1 out of 2 in 5ms7

Go back to Barium Binding Sites List in 5ms7
Barium binding site 1 out of 2 in the Crystal Structure of the Legionella Pneumophila Effector Protein RAVZ_20-502


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 1 of Crystal Structure of the Legionella Pneumophila Effector Protein RAVZ_20-502 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba601

b:0.3
occ:1.00
O2 A:GOL603 2.6 0.6 1.0
O A:VAL135 2.9 0.3 1.0
OD2 A:ASP140 3.4 0.2 1.0
OD1 A:ASP137 3.4 0.2 1.0
C2 A:GOL603 3.9 0.5 1.0
C A:VAL135 4.1 80.8 1.0
CG A:ASP137 4.1 85.8 1.0
O A:HOH711 4.1 75.3 1.0
CG A:ASP140 4.4 92.8 1.0
CA A:ASP137 4.5 60.2 1.0
N A:VAL135 4.6 83.0 1.0
C3 A:GOL603 4.6 0.8 1.0
N A:ASP137 4.6 76.0 1.0
OD2 A:ASP137 4.7 0.1 1.0
C A:ASN136 4.7 71.7 1.0
NZ A:LYS230 4.7 0.9 1.0
CB A:ASP140 4.7 74.0 1.0
CA A:VAL135 4.8 72.6 1.0
O A:ASN136 4.8 68.5 1.0
CB A:VAL135 4.9 59.3 1.0
CB A:ASP137 5.0 69.3 1.0

Barium binding site 2 out of 2 in 5ms7

Go back to Barium Binding Sites List in 5ms7
Barium binding site 2 out of 2 in the Crystal Structure of the Legionella Pneumophila Effector Protein RAVZ_20-502


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 2 of Crystal Structure of the Legionella Pneumophila Effector Protein RAVZ_20-502 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba602

b:0.8
occ:1.00
OE1 A:GLU229 3.9 0.1 1.0

Reference:

A.Yang, S.Pantoom, Y.W.Wu. Elucidation of the Anti-Autophagy Mechanism of the Legionella Effector Ravz Using Semisynthetic LC3 Proteins. Elife V. 6 2017.
ISSN: ESSN 2050-084X
PubMed: 28395732
DOI: 10.7554/ELIFE.23905
Page generated: Sat Dec 12 01:57:40 2020

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