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Barium in PDB 5ms8: Crystal Structure of the Legionella Pneumophila Effector Protein RAVZ_1-487

Protein crystallography data

The structure of Crystal Structure of the Legionella Pneumophila Effector Protein RAVZ_1-487, PDB code: 5ms8 was solved by S.Pantoom, I.R.Vetter, Y.W.Wu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.05 / 2.85
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 221.270, 221.270, 73.270, 90.00, 90.00, 90.00
R / Rfree (%) 20.1 / 25

Barium Binding Sites:

The binding sites of Barium atom in the Crystal Structure of the Legionella Pneumophila Effector Protein RAVZ_1-487 (pdb code 5ms8). This binding sites where shown within 5.0 Angstroms radius around Barium atom.
In total 2 binding sites of Barium where determined in the Crystal Structure of the Legionella Pneumophila Effector Protein RAVZ_1-487, PDB code: 5ms8:
Jump to Barium binding site number: 1; 2;

Barium binding site 1 out of 2 in 5ms8

Go back to Barium Binding Sites List in 5ms8
Barium binding site 1 out of 2 in the Crystal Structure of the Legionella Pneumophila Effector Protein RAVZ_1-487


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 1 of Crystal Structure of the Legionella Pneumophila Effector Protein RAVZ_1-487 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba501

b:0.1
occ:1.00
O A:VAL135 2.8 0.8 1.0
OD1 A:ASP137 2.8 0.9 1.0
O A:HOH613 3.1 65.5 1.0
OD2 A:ASP140 3.4 0.9 1.0
CG A:ASP137 3.9 0.8 1.0
C A:VAL135 3.9 89.1 1.0
N A:ASP137 4.4 73.5 1.0
CA A:ASP137 4.4 76.9 1.0
CG A:ASP140 4.4 0.5 1.0
N A:VAL135 4.4 84.2 1.0
OD2 A:ASP137 4.6 0.3 1.0
CB A:ASP140 4.7 89.1 1.0
CA A:VAL135 4.7 78.9 1.0
C A:ASN136 4.7 74.3 1.0
CB A:ASP137 4.8 85.2 1.0
NZ A:LYS230 4.8 0.5 1.0
CB A:VAL135 4.9 73.5 1.0
N A:ASN136 4.9 82.0 1.0

Barium binding site 2 out of 2 in 5ms8

Go back to Barium Binding Sites List in 5ms8
Barium binding site 2 out of 2 in the Crystal Structure of the Legionella Pneumophila Effector Protein RAVZ_1-487


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 2 of Crystal Structure of the Legionella Pneumophila Effector Protein RAVZ_1-487 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba502

b:0.9
occ:1.00
OE1 A:GLU229 4.4 0.6 1.0

Reference:

A.Yang, S.Pantoom, Y.W.Wu. Elucidation of the Anti-Autophagy Mechanism of the Legionella Effector Ravz Using Semisynthetic LC3 Proteins. Elife V. 6 2017.
ISSN: ESSN 2050-084X
PubMed: 28395732
DOI: 10.7554/ELIFE.23905
Page generated: Sat Dec 12 01:57:42 2020

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