Atomistry » Barium » PDB 7awp-7t6y » 7dik
Atomistry »
  Barium »
    PDB 7awp-7t6y »
      7dik »

Barium in PDB 7dik: Structure of PFGRX1 with Barium

Enzymatic activity of Structure of PFGRX1 with Barium

All present enzymatic activity of Structure of PFGRX1 with Barium:
1.8.4.2;

Protein crystallography data

The structure of Structure of PFGRX1 with Barium, PDB code: 7dik was solved by Y.Manickam, A.Sharma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.11 / 1.55
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 48.224, 48.224, 82.989, 90, 90, 120
R / Rfree (%) 13.2 / 17.3

Barium Binding Sites:

The binding sites of Barium atom in the Structure of PFGRX1 with Barium (pdb code 7dik). This binding sites where shown within 5.0 Angstroms radius around Barium atom.
In total 4 binding sites of Barium where determined in the Structure of PFGRX1 with Barium, PDB code: 7dik:
Jump to Barium binding site number: 1; 2; 3; 4;

Barium binding site 1 out of 4 in 7dik

Go back to Barium Binding Sites List in 7dik
Barium binding site 1 out of 4 in the Structure of PFGRX1 with Barium


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 1 of Structure of PFGRX1 with Barium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba203

b:54.5
occ:0.35
BA A:BA206 2.7 82.0 0.3
O A:PRO57 2.9 19.7 1.0
HB2 A:PRO57 3.2 21.8 1.0
O A:HOH360 3.5 31.6 1.0
O A:HOH412 3.7 34.6 1.0
C A:PRO57 3.8 16.5 1.0
HA A:PRO57 3.8 19.6 1.0
CB A:PRO57 3.8 18.2 1.0
HB3 A:PRO57 3.9 21.8 1.0
CA A:PRO57 4.0 16.4 1.0
O A:HOH315 4.1 29.1 1.0
OD1 A:ASP58 4.8 23.4 1.0
HA A:ASP58 4.8 17.4 1.0
O A:HOH403 4.9 28.6 1.0
N A:ASP58 4.9 15.0 1.0

Barium binding site 2 out of 4 in 7dik

Go back to Barium Binding Sites List in 7dik
Barium binding site 2 out of 4 in the Structure of PFGRX1 with Barium


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 2 of Structure of PFGRX1 with Barium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba204

b:44.1
occ:0.29
OE1 A:GLU28 2.6 33.4 1.0
O A:HOH419 2.7 55.8 0.5
HB2 A:GLU28 3.7 27.7 1.0
HB3 A:GLU28 3.7 27.7 1.0
CD A:GLU28 3.8 32.2 1.0
CB A:GLU28 4.1 23.1 1.0
CG A:GLU28 4.5 25.7 1.0
OE2 A:GLU28 4.7 37.6 1.0

Barium binding site 3 out of 4 in 7dik

Go back to Barium Binding Sites List in 7dik
Barium binding site 3 out of 4 in the Structure of PFGRX1 with Barium


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 3 of Structure of PFGRX1 with Barium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba205

b:53.1
occ:0.25
O A:ASN45 2.7 18.4 1.0
O A:MET48 2.8 16.1 1.0
O A:HOH373 2.8 30.4 0.8
O A:HOH359 2.9 23.6 1.0
H A:MET48 3.4 16.8 1.0
HA A:SER46 3.8 20.3 1.0
C A:MET48 3.9 14.1 1.0
C A:ASN45 3.9 17.8 1.0
HB2 A:MET48 4.1 20.6 1.0
N A:MET48 4.1 14.0 1.0
C A:SER46 4.3 15.9 1.0
O A:SER46 4.4 17.0 1.0
CA A:MET48 4.4 13.6 1.0
CA A:SER46 4.4 16.9 1.0
HA A:HIS49 4.6 17.5 1.0
N A:SER46 4.7 18.0 1.0
CB A:MET48 4.7 17.2 1.0
HB3 A:MET48 4.7 20.6 1.0
HA A:ASN45 4.8 21.0 1.0
N A:HIS47 4.8 15.2 1.0
O A:HOH379 4.9 24.6 1.0
HB3 A:ASN45 4.9 27.3 1.0
CA A:ASN45 5.0 17.5 1.0

Barium binding site 4 out of 4 in 7dik

Go back to Barium Binding Sites List in 7dik
Barium binding site 4 out of 4 in the Structure of PFGRX1 with Barium


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 4 of Structure of PFGRX1 with Barium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba206

b:82.0
occ:0.35
BA A:BA203 2.7 54.5 0.3
O A:HOH315 2.8 29.1 1.0
O A:PRO57 3.5 19.7 1.0
O A:HOH403 3.7 28.6 1.0
O A:HOH302 4.1 28.7 1.0
O A:HOH412 4.1 34.6 1.0
HA A:ASP58 4.4 17.4 1.0
O A:HOH360 4.7 31.6 1.0
C A:PRO57 4.7 16.5 1.0
OD1 A:ASP58 4.9 23.4 1.0

Reference:

Y.Manickam, A.Sharma. Interaction of Metals with PFGRX1 To Be Published.
Page generated: Thu Nov 25 07:44:14 2021

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy