Barium in PDB 7rjt: Aplysia SLO1 with Barium
Other elements in 7rjt:
The structure of Aplysia SLO1 with Barium also contains other interesting chemical elements:
Barium Binding Sites:
The binding sites of Barium atom in the Aplysia SLO1 with Barium
(pdb code 7rjt). This binding sites where shown within
5.0 Angstroms radius around Barium atom.
In total 9 binding sites of Barium where determined in the
Aplysia SLO1 with Barium, PDB code: 7rjt:
Jump to Barium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Barium binding site 1 out
of 9 in 7rjt
Go back to
Barium Binding Sites List in 7rjt
Barium binding site 1 out
of 9 in the Aplysia SLO1 with Barium
 Mono view
 Stereo pair view
|
|
A full contact list of Barium with other atoms in the Ba binding
site number 1 of Aplysia SLO1 with Barium within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ba1101
b:86.8
occ:1.00
|
O
|
A:ARG503
|
2.7
|
46.1
|
1.0
|
|
O
|
A:GLY523
|
2.7
|
45.4
|
1.0
|
|
OE2
|
A:GLU525
|
2.7
|
49.2
|
1.0
|
|
O
|
A:GLU591
|
2.7
|
58.3
|
1.0
|
|
OE1
|
A:GLU525
|
2.8
|
49.2
|
1.0
|
|
CD
|
A:GLU525
|
3.1
|
49.2
|
1.0
|
|
OE2
|
A:GLU591
|
3.7
|
58.3
|
1.0
|
|
C
|
A:GLY523
|
3.9
|
45.4
|
1.0
|
|
C
|
A:GLU591
|
4.0
|
58.3
|
1.0
|
|
C
|
A:ARG503
|
4.0
|
46.1
|
1.0
|
|
OD1
|
A:ASP356
|
4.1
|
64.8
|
1.0
|
|
OD2
|
A:ASP356
|
4.1
|
64.8
|
1.0
|
|
CG
|
A:ASP356
|
4.2
|
64.8
|
1.0
|
|
CD
|
A:GLU591
|
4.3
|
58.3
|
1.0
|
|
CA
|
A:SER504
|
4.4
|
55.9
|
1.0
|
|
CG
|
A:GLU591
|
4.5
|
58.3
|
1.0
|
|
CA
|
A:GLY523
|
4.5
|
45.4
|
1.0
|
|
CG
|
A:GLU525
|
4.6
|
49.2
|
1.0
|
|
N
|
A:SER504
|
4.7
|
55.9
|
1.0
|
|
CA
|
A:GLU591
|
4.7
|
58.3
|
1.0
|
|
N
|
A:SER592
|
4.9
|
66.2
|
1.0
|
|
N
|
A:ARG503
|
4.9
|
46.1
|
1.0
|
|
N
|
A:MET524
|
5.0
|
44.6
|
1.0
|
|
CA
|
A:SER592
|
5.0
|
66.2
|
1.0
|
|
Barium binding site 2 out
of 9 in 7rjt
Go back to
Barium Binding Sites List in 7rjt
Barium binding site 2 out
of 9 in the Aplysia SLO1 with Barium
 Mono view
 Stereo pair view
|
|
A full contact list of Barium with other atoms in the Ba binding
site number 2 of Aplysia SLO1 with Barium within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ba1102
b:61.8
occ:1.00
|
OD1
|
A:ASP907
|
2.7
|
56.7
|
1.0
|
|
OD2
|
A:ASP907
|
2.7
|
56.7
|
1.0
|
|
O
|
A:ASP902
|
2.7
|
47.0
|
1.0
|
|
OD1
|
A:ASP905
|
2.7
|
58.3
|
1.0
|
|
O
|
A:GLN899
|
2.7
|
37.7
|
1.0
|
|
OD1
|
B:ASN438
|
2.8
|
35.6
|
1.0
|
|
CG
|
A:ASP907
|
3.1
|
56.7
|
1.0
|
|
CG
|
B:ASN438
|
3.7
|
35.6
|
1.0
|
|
CG
|
A:ASP905
|
3.8
|
58.3
|
1.0
|
|
O
|
A:ASP905
|
3.9
|
58.3
|
1.0
|
|
C
|
A:ASP902
|
4.0
|
47.0
|
1.0
|
|
C
|
A:GLN899
|
4.0
|
37.7
|
1.0
|
|
ND2
|
B:ASN438
|
4.1
|
35.6
|
1.0
|
|
OD2
|
A:ASP905
|
4.1
|
58.3
|
1.0
|
|
CA
|
A:GLN903
|
4.4
|
53.0
|
1.0
|
|
O
|
A:GLN903
|
4.4
|
53.0
|
1.0
|
|
CB
|
A:ASP907
|
4.5
|
56.7
|
1.0
|
|
N
|
A:GLN903
|
4.6
|
53.0
|
1.0
|
|
C
|
A:ASP905
|
4.7
|
58.3
|
1.0
|
|
C
|
A:GLN903
|
4.7
|
53.0
|
1.0
|
|
CA
|
A:GLN899
|
4.7
|
37.7
|
1.0
|
|
N
|
A:ASP907
|
4.9
|
56.7
|
1.0
|
|
CB
|
B:ASN438
|
4.9
|
35.6
|
1.0
|
|
N
|
A:PHE900
|
4.9
|
32.9
|
1.0
|
|
N
|
A:ASP902
|
5.0
|
47.0
|
1.0
|
|
Barium binding site 3 out
of 9 in 7rjt
Go back to
Barium Binding Sites List in 7rjt
Barium binding site 3 out
of 9 in the Aplysia SLO1 with Barium
 Mono view
 Stereo pair view
|
|
A full contact list of Barium with other atoms in the Ba binding
site number 3 of Aplysia SLO1 with Barium within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ba1108
b:153.4
occ:1.00
|
O
|
C:VAL277
|
2.7
|
154.7
|
1.0
|
|
O
|
D:VAL277
|
2.7
|
154.5
|
1.0
|
|
O
|
B:VAL277
|
2.7
|
155.0
|
1.0
|
|
O
|
A:VAL277
|
2.8
|
154.7
|
1.0
|
|
O
|
B:THR276
|
2.9
|
156.0
|
1.0
|
|
O
|
C:THR276
|
2.9
|
155.7
|
1.0
|
|
O
|
D:THR276
|
2.9
|
155.4
|
1.0
|
|
O
|
A:THR276
|
2.9
|
155.7
|
1.0
|
|
K
|
A:K1109
|
3.2
|
142.3
|
1.0
|
|
C
|
B:VAL277
|
3.6
|
155.0
|
1.0
|
|
C
|
C:VAL277
|
3.6
|
154.7
|
1.0
|
|
C
|
D:VAL277
|
3.6
|
154.5
|
1.0
|
|
C
|
A:VAL277
|
3.6
|
154.7
|
1.0
|
|
K
|
A:K1107
|
3.9
|
138.9
|
1.0
|
|
C
|
B:THR276
|
3.9
|
156.0
|
1.0
|
|
C
|
C:THR276
|
3.9
|
155.7
|
1.0
|
|
C
|
D:THR276
|
3.9
|
155.4
|
1.0
|
|
C
|
A:THR276
|
3.9
|
155.7
|
1.0
|
|
CA
|
D:VAL277
|
4.0
|
154.5
|
1.0
|
|
CA
|
B:VAL277
|
4.0
|
155.0
|
1.0
|
|
CA
|
C:VAL277
|
4.0
|
154.7
|
1.0
|
|
CA
|
A:VAL277
|
4.0
|
154.7
|
1.0
|
|
N
|
D:VAL277
|
4.4
|
154.5
|
1.0
|
|
N
|
A:VAL277
|
4.4
|
154.7
|
1.0
|
|
N
|
B:VAL277
|
4.4
|
155.0
|
1.0
|
|
N
|
C:VAL277
|
4.4
|
154.7
|
1.0
|
|
N
|
B:GLY278
|
4.8
|
153.8
|
1.0
|
|
N
|
C:GLY278
|
4.8
|
153.9
|
1.0
|
|
N
|
D:GLY278
|
4.8
|
153.3
|
1.0
|
|
N
|
A:GLY278
|
4.8
|
153.3
|
1.0
|
|
Barium binding site 4 out
of 9 in 7rjt
Go back to
Barium Binding Sites List in 7rjt
Barium binding site 4 out
of 9 in the Aplysia SLO1 with Barium
 Mono view
 Stereo pair view
|
|
A full contact list of Barium with other atoms in the Ba binding
site number 4 of Aplysia SLO1 with Barium within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ba1101
b:87.3
occ:1.00
|
OE2
|
B:GLU525
|
2.7
|
49.0
|
1.0
|
|
OE1
|
B:GLU525
|
2.7
|
49.0
|
1.0
|
|
O
|
B:ARG503
|
2.7
|
46.0
|
1.0
|
|
O
|
B:GLU591
|
2.7
|
58.2
|
1.0
|
|
O
|
B:GLY523
|
2.7
|
45.1
|
1.0
|
|
CD
|
B:GLU525
|
3.1
|
49.0
|
1.0
|
|
OE2
|
B:GLU591
|
3.7
|
58.2
|
1.0
|
|
C
|
B:GLY523
|
3.9
|
45.1
|
1.0
|
|
C
|
B:GLU591
|
4.0
|
58.2
|
1.0
|
|
C
|
B:ARG503
|
4.0
|
46.0
|
1.0
|
|
OD1
|
B:ASP356
|
4.1
|
65.2
|
1.0
|
|
OD2
|
B:ASP356
|
4.1
|
65.2
|
1.0
|
|
CG
|
B:ASP356
|
4.2
|
65.2
|
1.0
|
|
CD
|
B:GLU591
|
4.3
|
58.2
|
1.0
|
|
CA
|
B:SER504
|
4.4
|
55.9
|
1.0
|
|
CG
|
B:GLU591
|
4.5
|
58.2
|
1.0
|
|
CA
|
B:GLY523
|
4.5
|
45.1
|
1.0
|
|
CG
|
B:GLU525
|
4.6
|
49.0
|
1.0
|
|
N
|
B:SER504
|
4.7
|
55.9
|
1.0
|
|
CA
|
B:GLU591
|
4.7
|
58.2
|
1.0
|
|
N
|
B:SER592
|
4.9
|
66.2
|
1.0
|
|
N
|
B:ARG503
|
4.9
|
46.0
|
1.0
|
|
N
|
B:MET524
|
5.0
|
44.4
|
1.0
|
|
CA
|
B:SER592
|
5.0
|
66.2
|
1.0
|
|
Barium binding site 5 out
of 9 in 7rjt
Go back to
Barium Binding Sites List in 7rjt
Barium binding site 5 out
of 9 in the Aplysia SLO1 with Barium
 Mono view
 Stereo pair view
|
|
A full contact list of Barium with other atoms in the Ba binding
site number 5 of Aplysia SLO1 with Barium within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ba1102
b:61.5
occ:1.00
|
OD1
|
B:ASP907
|
2.7
|
56.3
|
1.0
|
|
OD1
|
C:ASN438
|
2.7
|
35.5
|
1.0
|
|
OD2
|
B:ASP907
|
2.7
|
56.3
|
1.0
|
|
O
|
B:ASP902
|
2.7
|
47.2
|
1.0
|
|
OD1
|
B:ASP905
|
2.7
|
58.4
|
1.0
|
|
O
|
B:GLN899
|
2.7
|
37.6
|
1.0
|
|
CG
|
B:ASP907
|
3.1
|
56.3
|
1.0
|
|
CG
|
C:ASN438
|
3.7
|
35.5
|
1.0
|
|
CG
|
B:ASP905
|
3.8
|
58.4
|
1.0
|
|
O
|
B:ASP905
|
3.9
|
58.4
|
1.0
|
|
C
|
B:ASP902
|
4.0
|
47.2
|
1.0
|
|
C
|
B:GLN899
|
4.0
|
37.6
|
1.0
|
|
ND2
|
C:ASN438
|
4.1
|
35.5
|
1.0
|
|
OD2
|
B:ASP905
|
4.1
|
58.4
|
1.0
|
|
CA
|
B:GLN903
|
4.4
|
53.2
|
1.0
|
|
O
|
B:GLN903
|
4.4
|
53.2
|
1.0
|
|
CB
|
B:ASP907
|
4.5
|
56.3
|
1.0
|
|
N
|
B:GLN903
|
4.6
|
53.2
|
1.0
|
|
C
|
B:ASP905
|
4.7
|
58.4
|
1.0
|
|
C
|
B:GLN903
|
4.7
|
53.2
|
1.0
|
|
CA
|
B:GLN899
|
4.7
|
37.6
|
1.0
|
|
N
|
B:ASP907
|
4.9
|
56.3
|
1.0
|
|
CB
|
C:ASN438
|
4.9
|
35.5
|
1.0
|
|
N
|
B:PHE900
|
4.9
|
33.0
|
1.0
|
|
N
|
B:ASP902
|
5.0
|
47.2
|
1.0
|
|
Barium binding site 6 out
of 9 in 7rjt
Go back to
Barium Binding Sites List in 7rjt
Barium binding site 6 out
of 9 in the Aplysia SLO1 with Barium
 Mono view
 Stereo pair view
|
|
A full contact list of Barium with other atoms in the Ba binding
site number 6 of Aplysia SLO1 with Barium within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ba1101
b:88.7
occ:1.00
|
OE1
|
C:GLU525
|
2.7
|
49.1
|
1.0
|
|
O
|
C:GLU591
|
2.7
|
58.0
|
1.0
|
|
O
|
C:GLY523
|
2.7
|
45.0
|
1.0
|
|
OE2
|
C:GLU525
|
2.7
|
49.1
|
1.0
|
|
O
|
C:ARG503
|
2.8
|
46.0
|
1.0
|
|
CD
|
C:GLU525
|
3.1
|
49.1
|
1.0
|
|
OE2
|
C:GLU591
|
3.7
|
58.0
|
1.0
|
|
C
|
C:GLY523
|
3.9
|
45.0
|
1.0
|
|
C
|
C:GLU591
|
4.0
|
58.0
|
1.0
|
|
C
|
C:ARG503
|
4.0
|
46.0
|
1.0
|
|
OD1
|
C:ASP356
|
4.1
|
65.5
|
1.0
|
|
OD2
|
C:ASP356
|
4.1
|
65.5
|
1.0
|
|
CG
|
C:ASP356
|
4.2
|
65.5
|
1.0
|
|
CD
|
C:GLU591
|
4.3
|
58.0
|
1.0
|
|
CA
|
C:SER504
|
4.4
|
55.8
|
1.0
|
|
CG
|
C:GLU591
|
4.5
|
58.0
|
1.0
|
|
CA
|
C:GLY523
|
4.5
|
45.0
|
1.0
|
|
CG
|
C:GLU525
|
4.6
|
49.1
|
1.0
|
|
N
|
C:SER504
|
4.7
|
55.8
|
1.0
|
|
CA
|
C:GLU591
|
4.7
|
58.0
|
1.0
|
|
N
|
C:SER592
|
4.9
|
66.4
|
1.0
|
|
N
|
C:ARG503
|
4.9
|
46.0
|
1.0
|
|
N
|
C:MET524
|
5.0
|
44.3
|
1.0
|
|
CA
|
C:SER592
|
5.0
|
66.4
|
1.0
|
|
Barium binding site 7 out
of 9 in 7rjt
Go back to
Barium Binding Sites List in 7rjt
Barium binding site 7 out
of 9 in the Aplysia SLO1 with Barium
 Mono view
 Stereo pair view
|
|
A full contact list of Barium with other atoms in the Ba binding
site number 7 of Aplysia SLO1 with Barium within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ba1102
b:61.9
occ:1.00
|
OD1
|
C:ASP907
|
2.7
|
56.5
|
1.0
|
|
O
|
C:ASP902
|
2.7
|
47.5
|
1.0
|
|
OD2
|
C:ASP907
|
2.7
|
56.5
|
1.0
|
|
OD1
|
C:ASP905
|
2.7
|
58.6
|
1.0
|
|
O
|
C:GLN899
|
2.8
|
37.7
|
1.0
|
|
OD1
|
D:ASN438
|
2.8
|
35.3
|
1.0
|
|
CG
|
C:ASP907
|
3.1
|
56.5
|
1.0
|
|
CG
|
D:ASN438
|
3.7
|
35.3
|
1.0
|
|
CG
|
C:ASP905
|
3.8
|
58.6
|
1.0
|
|
O
|
C:ASP905
|
3.9
|
58.6
|
1.0
|
|
C
|
C:ASP902
|
4.0
|
47.5
|
1.0
|
|
C
|
C:GLN899
|
4.0
|
37.7
|
1.0
|
|
ND2
|
D:ASN438
|
4.1
|
35.3
|
1.0
|
|
OD2
|
C:ASP905
|
4.1
|
58.6
|
1.0
|
|
CA
|
C:GLN903
|
4.4
|
53.1
|
1.0
|
|
O
|
C:GLN903
|
4.4
|
53.1
|
1.0
|
|
CB
|
C:ASP907
|
4.5
|
56.5
|
1.0
|
|
N
|
C:GLN903
|
4.6
|
53.1
|
1.0
|
|
C
|
C:ASP905
|
4.7
|
58.6
|
1.0
|
|
C
|
C:GLN903
|
4.7
|
53.1
|
1.0
|
|
CA
|
C:GLN899
|
4.7
|
37.7
|
1.0
|
|
N
|
C:ASP907
|
4.9
|
56.5
|
1.0
|
|
CB
|
D:ASN438
|
4.9
|
35.3
|
1.0
|
|
N
|
C:PHE900
|
4.9
|
32.8
|
1.0
|
|
N
|
C:ASP902
|
5.0
|
47.5
|
1.0
|
|
Barium binding site 8 out
of 9 in 7rjt
Go back to
Barium Binding Sites List in 7rjt
Barium binding site 8 out
of 9 in the Aplysia SLO1 with Barium
 Mono view
 Stereo pair view
|
|
A full contact list of Barium with other atoms in the Ba binding
site number 8 of Aplysia SLO1 with Barium within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ba1101
b:88.4
occ:1.00
|
O
|
D:GLY523
|
2.7
|
45.5
|
1.0
|
|
O
|
D:GLU591
|
2.7
|
58.4
|
1.0
|
|
OE1
|
D:GLU525
|
2.8
|
49.3
|
1.0
|
|
O
|
D:ARG503
|
2.8
|
46.4
|
1.0
|
|
OE2
|
D:GLU525
|
2.8
|
49.3
|
1.0
|
|
CD
|
D:GLU525
|
3.1
|
49.3
|
1.0
|
|
OE2
|
D:GLU591
|
3.7
|
58.4
|
1.0
|
|
C
|
D:GLY523
|
3.9
|
45.5
|
1.0
|
|
C
|
D:GLU591
|
4.0
|
58.4
|
1.0
|
|
C
|
D:ARG503
|
4.0
|
46.4
|
1.0
|
|
OD1
|
D:ASP356
|
4.1
|
65.5
|
1.0
|
|
OD2
|
D:ASP356
|
4.1
|
65.5
|
1.0
|
|
CG
|
D:ASP356
|
4.2
|
65.5
|
1.0
|
|
CD
|
D:GLU591
|
4.3
|
58.4
|
1.0
|
|
CA
|
D:SER504
|
4.4
|
56.0
|
1.0
|
|
CG
|
D:GLU591
|
4.5
|
58.4
|
1.0
|
|
CA
|
D:GLY523
|
4.5
|
45.5
|
1.0
|
|
CG
|
D:GLU525
|
4.6
|
49.3
|
1.0
|
|
N
|
D:SER504
|
4.7
|
56.0
|
1.0
|
|
CA
|
D:GLU591
|
4.7
|
58.4
|
1.0
|
|
N
|
D:SER592
|
4.9
|
66.5
|
1.0
|
|
N
|
D:ARG503
|
4.9
|
46.4
|
1.0
|
|
N
|
D:MET524
|
5.0
|
44.5
|
1.0
|
|
CA
|
D:SER592
|
5.0
|
66.5
|
1.0
|
|
Barium binding site 9 out
of 9 in 7rjt
Go back to
Barium Binding Sites List in 7rjt
Barium binding site 9 out
of 9 in the Aplysia SLO1 with Barium
 Mono view
 Stereo pair view
|
|
A full contact list of Barium with other atoms in the Ba binding
site number 9 of Aplysia SLO1 with Barium within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ba1102
b:62.4
occ:1.00
|
OD1
|
D:ASP907
|
2.7
|
56.5
|
1.0
|
|
O
|
D:ASP902
|
2.7
|
47.4
|
1.0
|
|
OD2
|
D:ASP907
|
2.7
|
56.5
|
1.0
|
|
OD1
|
D:ASP905
|
2.7
|
58.5
|
1.0
|
|
O
|
D:GLN899
|
2.8
|
37.9
|
1.0
|
|
OD1
|
A:ASN438
|
2.8
|
35.6
|
1.0
|
|
CG
|
D:ASP907
|
3.1
|
56.5
|
1.0
|
|
CG
|
A:ASN438
|
3.7
|
35.6
|
1.0
|
|
CG
|
D:ASP905
|
3.8
|
58.5
|
1.0
|
|
O
|
D:ASP905
|
3.9
|
58.5
|
1.0
|
|
C
|
D:ASP902
|
4.0
|
47.4
|
1.0
|
|
C
|
D:GLN899
|
4.0
|
37.9
|
1.0
|
|
ND2
|
A:ASN438
|
4.1
|
35.6
|
1.0
|
|
OD2
|
D:ASP905
|
4.1
|
58.5
|
1.0
|
|
CA
|
D:GLN903
|
4.4
|
53.2
|
1.0
|
|
O
|
D:GLN903
|
4.4
|
53.2
|
1.0
|
|
CB
|
D:ASP907
|
4.5
|
56.5
|
1.0
|
|
N
|
D:GLN903
|
4.6
|
53.2
|
1.0
|
|
C
|
D:ASP905
|
4.7
|
58.5
|
1.0
|
|
C
|
D:GLN903
|
4.7
|
53.2
|
1.0
|
|
CA
|
D:GLN899
|
4.7
|
37.9
|
1.0
|
|
N
|
D:ASP907
|
4.9
|
56.5
|
1.0
|
|
CB
|
A:ASN438
|
4.9
|
35.6
|
1.0
|
|
N
|
D:PHE900
|
4.9
|
32.8
|
1.0
|
|
N
|
D:ASP902
|
5.0
|
47.4
|
1.0
|
|
Reference:
J.Zhu,
S.Srivastava,
R.Cachau,
M.Holmgren.
Cryoem Structure of Aplysia SLO1 with 10 Mm BA2+ at 2.93 A To Be Published.
Page generated: Tue Apr 4 17:23:00 2023
|
