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Barium in PDB 7rjt: Aplysia SLO1 with Barium

Other elements in 7rjt:

The structure of Aplysia SLO1 with Barium also contains other interesting chemical elements:

Potassium (K) 3 atoms

Barium Binding Sites:

The binding sites of Barium atom in the Aplysia SLO1 with Barium (pdb code 7rjt). This binding sites where shown within 5.0 Angstroms radius around Barium atom.
In total 9 binding sites of Barium where determined in the Aplysia SLO1 with Barium, PDB code: 7rjt:
Jump to Barium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Barium binding site 1 out of 9 in 7rjt

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Barium binding site 1 out of 9 in the Aplysia SLO1 with Barium


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 1 of Aplysia SLO1 with Barium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba1101

b:86.8
occ:1.00
O A:ARG503 2.7 46.1 1.0
O A:GLY523 2.7 45.4 1.0
OE2 A:GLU525 2.7 49.2 1.0
O A:GLU591 2.7 58.3 1.0
OE1 A:GLU525 2.8 49.2 1.0
CD A:GLU525 3.1 49.2 1.0
OE2 A:GLU591 3.7 58.3 1.0
C A:GLY523 3.9 45.4 1.0
C A:GLU591 4.0 58.3 1.0
C A:ARG503 4.0 46.1 1.0
OD1 A:ASP356 4.1 64.8 1.0
OD2 A:ASP356 4.1 64.8 1.0
CG A:ASP356 4.2 64.8 1.0
CD A:GLU591 4.3 58.3 1.0
CA A:SER504 4.4 55.9 1.0
CG A:GLU591 4.5 58.3 1.0
CA A:GLY523 4.5 45.4 1.0
CG A:GLU525 4.6 49.2 1.0
N A:SER504 4.7 55.9 1.0
CA A:GLU591 4.7 58.3 1.0
N A:SER592 4.9 66.2 1.0
N A:ARG503 4.9 46.1 1.0
N A:MET524 5.0 44.6 1.0
CA A:SER592 5.0 66.2 1.0

Barium binding site 2 out of 9 in 7rjt

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Barium binding site 2 out of 9 in the Aplysia SLO1 with Barium


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 2 of Aplysia SLO1 with Barium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba1102

b:61.8
occ:1.00
OD1 A:ASP907 2.7 56.7 1.0
OD2 A:ASP907 2.7 56.7 1.0
O A:ASP902 2.7 47.0 1.0
OD1 A:ASP905 2.7 58.3 1.0
O A:GLN899 2.7 37.7 1.0
OD1 B:ASN438 2.8 35.6 1.0
CG A:ASP907 3.1 56.7 1.0
CG B:ASN438 3.7 35.6 1.0
CG A:ASP905 3.8 58.3 1.0
O A:ASP905 3.9 58.3 1.0
C A:ASP902 4.0 47.0 1.0
C A:GLN899 4.0 37.7 1.0
ND2 B:ASN438 4.1 35.6 1.0
OD2 A:ASP905 4.1 58.3 1.0
CA A:GLN903 4.4 53.0 1.0
O A:GLN903 4.4 53.0 1.0
CB A:ASP907 4.5 56.7 1.0
N A:GLN903 4.6 53.0 1.0
C A:ASP905 4.7 58.3 1.0
C A:GLN903 4.7 53.0 1.0
CA A:GLN899 4.7 37.7 1.0
N A:ASP907 4.9 56.7 1.0
CB B:ASN438 4.9 35.6 1.0
N A:PHE900 4.9 32.9 1.0
N A:ASP902 5.0 47.0 1.0

Barium binding site 3 out of 9 in 7rjt

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Barium binding site 3 out of 9 in the Aplysia SLO1 with Barium


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 3 of Aplysia SLO1 with Barium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba1108

b:153.4
occ:1.00
O C:VAL277 2.7 154.7 1.0
O D:VAL277 2.7 154.5 1.0
O B:VAL277 2.7 155.0 1.0
O A:VAL277 2.8 154.7 1.0
O B:THR276 2.9 156.0 1.0
O C:THR276 2.9 155.7 1.0
O D:THR276 2.9 155.4 1.0
O A:THR276 2.9 155.7 1.0
K A:K1109 3.2 142.3 1.0
C B:VAL277 3.6 155.0 1.0
C C:VAL277 3.6 154.7 1.0
C D:VAL277 3.6 154.5 1.0
C A:VAL277 3.6 154.7 1.0
K A:K1107 3.9 138.9 1.0
C B:THR276 3.9 156.0 1.0
C C:THR276 3.9 155.7 1.0
C D:THR276 3.9 155.4 1.0
C A:THR276 3.9 155.7 1.0
CA D:VAL277 4.0 154.5 1.0
CA B:VAL277 4.0 155.0 1.0
CA C:VAL277 4.0 154.7 1.0
CA A:VAL277 4.0 154.7 1.0
N D:VAL277 4.4 154.5 1.0
N A:VAL277 4.4 154.7 1.0
N B:VAL277 4.4 155.0 1.0
N C:VAL277 4.4 154.7 1.0
N B:GLY278 4.8 153.8 1.0
N C:GLY278 4.8 153.9 1.0
N D:GLY278 4.8 153.3 1.0
N A:GLY278 4.8 153.3 1.0

Barium binding site 4 out of 9 in 7rjt

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Barium binding site 4 out of 9 in the Aplysia SLO1 with Barium


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 4 of Aplysia SLO1 with Barium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ba1101

b:87.3
occ:1.00
OE2 B:GLU525 2.7 49.0 1.0
OE1 B:GLU525 2.7 49.0 1.0
O B:ARG503 2.7 46.0 1.0
O B:GLU591 2.7 58.2 1.0
O B:GLY523 2.7 45.1 1.0
CD B:GLU525 3.1 49.0 1.0
OE2 B:GLU591 3.7 58.2 1.0
C B:GLY523 3.9 45.1 1.0
C B:GLU591 4.0 58.2 1.0
C B:ARG503 4.0 46.0 1.0
OD1 B:ASP356 4.1 65.2 1.0
OD2 B:ASP356 4.1 65.2 1.0
CG B:ASP356 4.2 65.2 1.0
CD B:GLU591 4.3 58.2 1.0
CA B:SER504 4.4 55.9 1.0
CG B:GLU591 4.5 58.2 1.0
CA B:GLY523 4.5 45.1 1.0
CG B:GLU525 4.6 49.0 1.0
N B:SER504 4.7 55.9 1.0
CA B:GLU591 4.7 58.2 1.0
N B:SER592 4.9 66.2 1.0
N B:ARG503 4.9 46.0 1.0
N B:MET524 5.0 44.4 1.0
CA B:SER592 5.0 66.2 1.0

Barium binding site 5 out of 9 in 7rjt

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Barium binding site 5 out of 9 in the Aplysia SLO1 with Barium


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 5 of Aplysia SLO1 with Barium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ba1102

b:61.5
occ:1.00
OD1 B:ASP907 2.7 56.3 1.0
OD1 C:ASN438 2.7 35.5 1.0
OD2 B:ASP907 2.7 56.3 1.0
O B:ASP902 2.7 47.2 1.0
OD1 B:ASP905 2.7 58.4 1.0
O B:GLN899 2.7 37.6 1.0
CG B:ASP907 3.1 56.3 1.0
CG C:ASN438 3.7 35.5 1.0
CG B:ASP905 3.8 58.4 1.0
O B:ASP905 3.9 58.4 1.0
C B:ASP902 4.0 47.2 1.0
C B:GLN899 4.0 37.6 1.0
ND2 C:ASN438 4.1 35.5 1.0
OD2 B:ASP905 4.1 58.4 1.0
CA B:GLN903 4.4 53.2 1.0
O B:GLN903 4.4 53.2 1.0
CB B:ASP907 4.5 56.3 1.0
N B:GLN903 4.6 53.2 1.0
C B:ASP905 4.7 58.4 1.0
C B:GLN903 4.7 53.2 1.0
CA B:GLN899 4.7 37.6 1.0
N B:ASP907 4.9 56.3 1.0
CB C:ASN438 4.9 35.5 1.0
N B:PHE900 4.9 33.0 1.0
N B:ASP902 5.0 47.2 1.0

Barium binding site 6 out of 9 in 7rjt

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Barium binding site 6 out of 9 in the Aplysia SLO1 with Barium


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 6 of Aplysia SLO1 with Barium within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ba1101

b:88.7
occ:1.00
OE1 C:GLU525 2.7 49.1 1.0
O C:GLU591 2.7 58.0 1.0
O C:GLY523 2.7 45.0 1.0
OE2 C:GLU525 2.7 49.1 1.0
O C:ARG503 2.8 46.0 1.0
CD C:GLU525 3.1 49.1 1.0
OE2 C:GLU591 3.7 58.0 1.0
C C:GLY523 3.9 45.0 1.0
C C:GLU591 4.0 58.0 1.0
C C:ARG503 4.0 46.0 1.0
OD1 C:ASP356 4.1 65.5 1.0
OD2 C:ASP356 4.1 65.5 1.0
CG C:ASP356 4.2 65.5 1.0
CD C:GLU591 4.3 58.0 1.0
CA C:SER504 4.4 55.8 1.0
CG C:GLU591 4.5 58.0 1.0
CA C:GLY523 4.5 45.0 1.0
CG C:GLU525 4.6 49.1 1.0
N C:SER504 4.7 55.8 1.0
CA C:GLU591 4.7 58.0 1.0
N C:SER592 4.9 66.4 1.0
N C:ARG503 4.9 46.0 1.0
N C:MET524 5.0 44.3 1.0
CA C:SER592 5.0 66.4 1.0

Barium binding site 7 out of 9 in 7rjt

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Barium binding site 7 out of 9 in the Aplysia SLO1 with Barium


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 7 of Aplysia SLO1 with Barium within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ba1102

b:61.9
occ:1.00
OD1 C:ASP907 2.7 56.5 1.0
O C:ASP902 2.7 47.5 1.0
OD2 C:ASP907 2.7 56.5 1.0
OD1 C:ASP905 2.7 58.6 1.0
O C:GLN899 2.8 37.7 1.0
OD1 D:ASN438 2.8 35.3 1.0
CG C:ASP907 3.1 56.5 1.0
CG D:ASN438 3.7 35.3 1.0
CG C:ASP905 3.8 58.6 1.0
O C:ASP905 3.9 58.6 1.0
C C:ASP902 4.0 47.5 1.0
C C:GLN899 4.0 37.7 1.0
ND2 D:ASN438 4.1 35.3 1.0
OD2 C:ASP905 4.1 58.6 1.0
CA C:GLN903 4.4 53.1 1.0
O C:GLN903 4.4 53.1 1.0
CB C:ASP907 4.5 56.5 1.0
N C:GLN903 4.6 53.1 1.0
C C:ASP905 4.7 58.6 1.0
C C:GLN903 4.7 53.1 1.0
CA C:GLN899 4.7 37.7 1.0
N C:ASP907 4.9 56.5 1.0
CB D:ASN438 4.9 35.3 1.0
N C:PHE900 4.9 32.8 1.0
N C:ASP902 5.0 47.5 1.0

Barium binding site 8 out of 9 in 7rjt

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Barium binding site 8 out of 9 in the Aplysia SLO1 with Barium


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 8 of Aplysia SLO1 with Barium within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ba1101

b:88.4
occ:1.00
O D:GLY523 2.7 45.5 1.0
O D:GLU591 2.7 58.4 1.0
OE1 D:GLU525 2.8 49.3 1.0
O D:ARG503 2.8 46.4 1.0
OE2 D:GLU525 2.8 49.3 1.0
CD D:GLU525 3.1 49.3 1.0
OE2 D:GLU591 3.7 58.4 1.0
C D:GLY523 3.9 45.5 1.0
C D:GLU591 4.0 58.4 1.0
C D:ARG503 4.0 46.4 1.0
OD1 D:ASP356 4.1 65.5 1.0
OD2 D:ASP356 4.1 65.5 1.0
CG D:ASP356 4.2 65.5 1.0
CD D:GLU591 4.3 58.4 1.0
CA D:SER504 4.4 56.0 1.0
CG D:GLU591 4.5 58.4 1.0
CA D:GLY523 4.5 45.5 1.0
CG D:GLU525 4.6 49.3 1.0
N D:SER504 4.7 56.0 1.0
CA D:GLU591 4.7 58.4 1.0
N D:SER592 4.9 66.5 1.0
N D:ARG503 4.9 46.4 1.0
N D:MET524 5.0 44.5 1.0
CA D:SER592 5.0 66.5 1.0

Barium binding site 9 out of 9 in 7rjt

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Barium binding site 9 out of 9 in the Aplysia SLO1 with Barium


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 9 of Aplysia SLO1 with Barium within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ba1102

b:62.4
occ:1.00
OD1 D:ASP907 2.7 56.5 1.0
O D:ASP902 2.7 47.4 1.0
OD2 D:ASP907 2.7 56.5 1.0
OD1 D:ASP905 2.7 58.5 1.0
O D:GLN899 2.8 37.9 1.0
OD1 A:ASN438 2.8 35.6 1.0
CG D:ASP907 3.1 56.5 1.0
CG A:ASN438 3.7 35.6 1.0
CG D:ASP905 3.8 58.5 1.0
O D:ASP905 3.9 58.5 1.0
C D:ASP902 4.0 47.4 1.0
C D:GLN899 4.0 37.9 1.0
ND2 A:ASN438 4.1 35.6 1.0
OD2 D:ASP905 4.1 58.5 1.0
CA D:GLN903 4.4 53.2 1.0
O D:GLN903 4.4 53.2 1.0
CB D:ASP907 4.5 56.5 1.0
N D:GLN903 4.6 53.2 1.0
C D:ASP905 4.7 58.5 1.0
C D:GLN903 4.7 53.2 1.0
CA D:GLN899 4.7 37.9 1.0
N D:ASP907 4.9 56.5 1.0
CB A:ASN438 4.9 35.6 1.0
N D:PHE900 4.9 32.8 1.0
N D:ASP902 5.0 47.4 1.0

Reference:

J.Zhu, S.Srivastava, R.Cachau, M.Holmgren. Cryoem Structure of Aplysia SLO1 with 10 Mm BA2+ at 2.93 A To Be Published.
Page generated: Wed Jul 10 16:08:02 2024

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