Atomistry » Barium » PDB 7awn-9b3g » 7rk6
Atomistry »
  Barium »
    PDB 7awn-9b3g »
      7rk6 »

Barium in PDB 7rk6: Aplysia SLO1 with Barium

Other elements in 7rk6:

The structure of Aplysia SLO1 with Barium also contains other interesting chemical elements:

Potassium (K) 3 atoms

Barium Binding Sites:

The binding sites of Barium atom in the Aplysia SLO1 with Barium (pdb code 7rk6). This binding sites where shown within 5.0 Angstroms radius around Barium atom.
In total 8 binding sites of Barium where determined in the Aplysia SLO1 with Barium, PDB code: 7rk6:
Jump to Barium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Barium binding site 1 out of 8 in 7rk6

Go back to Barium Binding Sites List in 7rk6
Barium binding site 1 out of 8 in the Aplysia SLO1 with Barium


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 1 of Aplysia SLO1 with Barium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba1101

b:155.7
occ:1.00
 OE2 A:GLU525 2.7 84.6 1.0
O A:GLU591 2.7 93.1 1.0
O A:GLY523 2.8 83.7 1.0
CD A:GLU525 3.8 84.6 1.0
C A:GLU591 3.9 93.1 1.0
C A:GLY523 3.9 83.7 1.0
O A:ARG503 4.0 80.3 1.0
OE1 A:GLU525 4.4 84.6 1.0
CA A:GLY523 4.6 83.7 1.0
OH A:TYR527 4.6 87.5 1.0
CA A:GLU591 4.6 93.1 1.0
OD2 A:ASP356 4.7 99.8 1.0
CG A:GLU525 4.7 84.6 1.0
CB A:SER592 4.8 100.3 1.0
N A:SER592 4.9 100.3 1.0
OE1 A:GLU591 4.9 93.1 1.0
CA A:SER592 5.0 100.3 1.0
CG A:ASP356 5.0 99.8 1.0
N A:MET524 5.0 81.5 1.0

Barium binding site 2 out of 8 in 7rk6

Go back to Barium Binding Sites List in 7rk6
Barium binding site 2 out of 8 in the Aplysia SLO1 with Barium


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 2 of Aplysia SLO1 with Barium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba1102

b:139.5
occ:1.00
 O A:HOH1201 2.7 88.9 1.0
OD1 A:ASP905 2.7 96.6 1.0
O A:GLN899 2.7 75.7 1.0
OD2 A:ASP905 2.7 96.6 1.0
O A:ASP902 2.8 85.5 1.0
OD1 B:ASN438 2.8 76.5 1.0
ND2 B:ASN438 2.9 76.5 1.0
CG A:ASP905 3.1 96.6 1.0
CG B:ASN438 3.2 76.5 1.0
C A:GLN899 3.8 75.7 1.0
C A:ASP902 3.9 85.5 1.0
CA A:GLN899 4.3 75.7 1.0
CB A:GLN899 4.4 75.7 1.0
CA A:GLN903 4.4 90.9 1.0
CB A:ASP905 4.6 96.6 1.0
N A:GLN903 4.6 90.9 1.0
CB B:ASN438 4.7 76.5 1.0
O A:GLN903 4.7 90.9 1.0
C A:GLN903 4.8 90.9 1.0
N A:PHE900 4.8 71.9 1.0
N A:ASP906 4.9 102.7 1.0

Barium binding site 3 out of 8 in 7rk6

Go back to Barium Binding Sites List in 7rk6
Barium binding site 3 out of 8 in the Aplysia SLO1 with Barium


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 3 of Aplysia SLO1 with Barium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ba1101

b:155.5
occ:1.00
 O B:GLU591 2.7 93.0 1.0
O B:GLY523 2.7 83.6 1.0
OE2 B:GLU525 2.8 84.6 1.0
CD B:GLU525 3.8 84.6 1.0
C B:GLU591 3.9 93.0 1.0
C B:GLY523 3.9 83.6 1.0
O B:ARG503 4.0 80.2 1.0
OE1 B:GLU525 4.4 84.6 1.0
CA B:GLY523 4.6 83.6 1.0
OH B:TYR527 4.6 87.4 1.0
CA B:GLU591 4.6 93.0 1.0
OD2 B:ASP356 4.7 99.6 1.0
CG B:GLU525 4.7 84.6 1.0
CB B:SER592 4.8 100.2 1.0
N B:SER592 4.9 100.2 1.0
OE1 B:GLU591 4.9 93.0 1.0
CA B:SER592 5.0 100.2 1.0
CG B:ASP356 5.0 99.6 1.0
N B:MET524 5.0 81.4 1.0

Barium binding site 4 out of 8 in 7rk6

Go back to Barium Binding Sites List in 7rk6
Barium binding site 4 out of 8 in the Aplysia SLO1 with Barium


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 4 of Aplysia SLO1 with Barium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ba1102

b:139.2
occ:1.00
 OD1 C:ASN438 2.7 76.5 1.0
O B:GLN899 2.7 75.7 1.0
OD1 B:ASP905 2.7 96.4 1.0
O B:HOH1201 2.7 89.1 1.0
O B:ASP902 2.8 85.2 1.0
OD2 B:ASP905 2.8 96.4 1.0
ND2 C:ASN438 2.9 76.5 1.0
CG B:ASP905 3.1 96.4 1.0
CG C:ASN438 3.2 76.5 1.0
C B:GLN899 3.8 75.7 1.0
C B:ASP902 3.9 85.2 1.0
CA B:GLN899 4.3 75.7 1.0
CB B:GLN899 4.4 75.7 1.0
CA B:GLN903 4.4 90.8 1.0
CB B:ASP905 4.6 96.4 1.0
N B:GLN903 4.6 90.8 1.0
CB C:ASN438 4.7 76.5 1.0
O B:GLN903 4.7 90.8 1.0
C B:GLN903 4.8 90.8 1.0
N B:PHE900 4.8 72.0 1.0
N B:ASP906 4.9 102.4 1.0

Barium binding site 5 out of 8 in 7rk6

Go back to Barium Binding Sites List in 7rk6
Barium binding site 5 out of 8 in the Aplysia SLO1 with Barium


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 5 of Aplysia SLO1 with Barium within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ba1101

b:154.3
occ:1.00
 OE2 C:GLU525 2.7 84.6 1.0
O C:GLY523 2.8 83.4 1.0
O C:GLU591 2.8 93.0 1.0
CD C:GLU525 3.8 84.6 1.0
C C:GLU591 3.9 93.0 1.0
C C:GLY523 3.9 83.4 1.0
O C:ARG503 4.0 80.1 1.0
OE1 C:GLU525 4.4 84.6 1.0
CA C:GLY523 4.6 83.4 1.0
OH C:TYR527 4.6 87.5 1.0
CA C:GLU591 4.6 93.0 1.0
OD2 C:ASP356 4.7 99.7 1.0
CG C:GLU525 4.7 84.6 1.0
CB C:SER592 4.8 100.2 1.0
N C:SER592 4.9 100.2 1.0
OE1 C:GLU591 4.9 93.0 1.0
CA C:SER592 5.0 100.2 1.0
CG C:ASP356 5.0 99.7 1.0
N C:MET524 5.0 81.5 1.0

Barium binding site 6 out of 8 in 7rk6

Go back to Barium Binding Sites List in 7rk6
Barium binding site 6 out of 8 in the Aplysia SLO1 with Barium


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 6 of Aplysia SLO1 with Barium within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ba1102

b:139.5
occ:1.00
 O C:HOH1201 2.7 88.6 1.0
OD1 C:ASP905 2.7 96.2 1.0
O C:GLN899 2.7 75.5 1.0
OD2 C:ASP905 2.7 96.2 1.0
OD1 D:ASN438 2.7 76.4 1.0
O C:ASP902 2.8 85.1 1.0
ND2 D:ASN438 2.9 76.4 1.0
CG C:ASP905 3.1 96.2 1.0
CG D:ASN438 3.2 76.4 1.0
C C:GLN899 3.8 75.5 1.0
C C:ASP902 3.9 85.1 1.0
CA C:GLN899 4.3 75.5 1.0
CB C:GLN899 4.4 75.5 1.0
CA C:GLN903 4.4 90.7 1.0
CB C:ASP905 4.6 96.2 1.0
N C:GLN903 4.6 90.7 1.0
CB D:ASN438 4.7 76.4 1.0
O C:GLN903 4.7 90.7 1.0
C C:GLN903 4.8 90.7 1.0
N C:PHE900 4.8 71.8 1.0
N C:ASP906 4.9 102.1 1.0

Barium binding site 7 out of 8 in 7rk6

Go back to Barium Binding Sites List in 7rk6
Barium binding site 7 out of 8 in the Aplysia SLO1 with Barium


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 7 of Aplysia SLO1 with Barium within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ba1101

b:156.2
occ:1.00
 OE2 D:GLU525 2.7 85.0 1.0
O D:GLU591 2.7 93.6 1.0
O D:GLY523 2.8 83.9 1.0
CD D:GLU525 3.8 85.0 1.0
C D:GLU591 3.9 93.6 1.0
C D:GLY523 3.9 83.9 1.0
O D:ARG503 4.0 80.3 1.0
OE1 D:GLU525 4.4 85.0 1.0
CA D:GLY523 4.6 83.9 1.0
OH D:TYR527 4.6 87.8 1.0
CA D:GLU591 4.6 93.6 1.0
OD2 D:ASP356 4.7 100.0 1.0
CG D:GLU525 4.7 85.0 1.0
CB D:SER592 4.8 100.7 1.0
N D:SER592 4.9 100.7 1.0
OE1 D:GLU591 4.9 93.6 1.0
CA D:SER592 5.0 100.7 1.0
CG D:ASP356 5.0 100.0 1.0
N D:MET524 5.0 81.9 1.0

Barium binding site 8 out of 8 in 7rk6

Go back to Barium Binding Sites List in 7rk6
Barium binding site 8 out of 8 in the Aplysia SLO1 with Barium


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 8 of Aplysia SLO1 with Barium within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ba1102

b:139.8
occ:1.00
 O D:HOH1201 2.7 88.7 1.0
OD1 D:ASP905 2.7 96.5 1.0
O D:GLN899 2.7 75.7 1.0
OD2 D:ASP905 2.7 96.5 1.0
O D:ASP902 2.8 85.4 1.0
OD1 A:ASN438 2.8 76.5 1.0
ND2 A:ASN438 2.9 76.5 1.0
CG D:ASP905 3.1 96.5 1.0
CG A:ASN438 3.2 76.5 1.0
C D:GLN899 3.8 75.7 1.0
C D:ASP902 3.9 85.4 1.0
CA D:GLN899 4.3 75.7 1.0
CB D:GLN899 4.4 75.7 1.0
CA D:GLN903 4.4 90.9 1.0
CB D:ASP905 4.6 96.5 1.0
N D:GLN903 4.6 90.9 1.0
CB A:ASN438 4.7 76.5 1.0
O D:GLN903 4.7 90.9 1.0
C D:GLN903 4.8 90.9 1.0
N D:PHE900 4.8 71.8 1.0
N D:ASP906 4.9 102.3 1.0

Reference:

J.Zhu, S.Srivastava, R.Cachau, M.Holmgren. Cryoem Structure of Aplysia SLO1 with 0 Mm BA2+ at 2.91 A To Be Published.
Page generated: Wed Jul 10 16:08:16 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy