Barium in PDB 7rk6: Aplysia SLO1 with Barium
Other elements in 7rk6:
The structure of Aplysia SLO1 with Barium also contains other interesting chemical elements:
Barium Binding Sites:
The binding sites of Barium atom in the Aplysia SLO1 with Barium
(pdb code 7rk6). This binding sites where shown within
5.0 Angstroms radius around Barium atom.
In total 8 binding sites of Barium where determined in the
Aplysia SLO1 with Barium, PDB code: 7rk6:
Jump to Barium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Barium binding site 1 out
of 8 in 7rk6
Go back to
Barium Binding Sites List in 7rk6
Barium binding site 1 out
of 8 in the Aplysia SLO1 with Barium
Mono view
Stereo pair view
|
A full contact list of Barium with other atoms in the Ba binding
site number 1 of Aplysia SLO1 with Barium within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ba1101
b:155.7
occ:1.00
|
OE2
|
A:GLU525
|
2.7
|
84.6
|
1.0
|
O
|
A:GLU591
|
2.7
|
93.1
|
1.0
|
O
|
A:GLY523
|
2.8
|
83.7
|
1.0
|
CD
|
A:GLU525
|
3.8
|
84.6
|
1.0
|
C
|
A:GLU591
|
3.9
|
93.1
|
1.0
|
C
|
A:GLY523
|
3.9
|
83.7
|
1.0
|
O
|
A:ARG503
|
4.0
|
80.3
|
1.0
|
OE1
|
A:GLU525
|
4.4
|
84.6
|
1.0
|
CA
|
A:GLY523
|
4.6
|
83.7
|
1.0
|
OH
|
A:TYR527
|
4.6
|
87.5
|
1.0
|
CA
|
A:GLU591
|
4.6
|
93.1
|
1.0
|
OD2
|
A:ASP356
|
4.7
|
99.8
|
1.0
|
CG
|
A:GLU525
|
4.7
|
84.6
|
1.0
|
CB
|
A:SER592
|
4.8
|
100.3
|
1.0
|
N
|
A:SER592
|
4.9
|
100.3
|
1.0
|
OE1
|
A:GLU591
|
4.9
|
93.1
|
1.0
|
CA
|
A:SER592
|
5.0
|
100.3
|
1.0
|
CG
|
A:ASP356
|
5.0
|
99.8
|
1.0
|
N
|
A:MET524
|
5.0
|
81.5
|
1.0
|
|
Barium binding site 2 out
of 8 in 7rk6
Go back to
Barium Binding Sites List in 7rk6
Barium binding site 2 out
of 8 in the Aplysia SLO1 with Barium
Mono view
Stereo pair view
|
A full contact list of Barium with other atoms in the Ba binding
site number 2 of Aplysia SLO1 with Barium within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ba1102
b:139.5
occ:1.00
|
O
|
A:HOH1201
|
2.7
|
88.9
|
1.0
|
OD1
|
A:ASP905
|
2.7
|
96.6
|
1.0
|
O
|
A:GLN899
|
2.7
|
75.7
|
1.0
|
OD2
|
A:ASP905
|
2.7
|
96.6
|
1.0
|
O
|
A:ASP902
|
2.8
|
85.5
|
1.0
|
OD1
|
B:ASN438
|
2.8
|
76.5
|
1.0
|
ND2
|
B:ASN438
|
2.9
|
76.5
|
1.0
|
CG
|
A:ASP905
|
3.1
|
96.6
|
1.0
|
CG
|
B:ASN438
|
3.2
|
76.5
|
1.0
|
C
|
A:GLN899
|
3.8
|
75.7
|
1.0
|
C
|
A:ASP902
|
3.9
|
85.5
|
1.0
|
CA
|
A:GLN899
|
4.3
|
75.7
|
1.0
|
CB
|
A:GLN899
|
4.4
|
75.7
|
1.0
|
CA
|
A:GLN903
|
4.4
|
90.9
|
1.0
|
CB
|
A:ASP905
|
4.6
|
96.6
|
1.0
|
N
|
A:GLN903
|
4.6
|
90.9
|
1.0
|
CB
|
B:ASN438
|
4.7
|
76.5
|
1.0
|
O
|
A:GLN903
|
4.7
|
90.9
|
1.0
|
C
|
A:GLN903
|
4.8
|
90.9
|
1.0
|
N
|
A:PHE900
|
4.8
|
71.9
|
1.0
|
N
|
A:ASP906
|
4.9
|
102.7
|
1.0
|
|
Barium binding site 3 out
of 8 in 7rk6
Go back to
Barium Binding Sites List in 7rk6
Barium binding site 3 out
of 8 in the Aplysia SLO1 with Barium
Mono view
Stereo pair view
|
A full contact list of Barium with other atoms in the Ba binding
site number 3 of Aplysia SLO1 with Barium within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ba1101
b:155.5
occ:1.00
|
O
|
B:GLU591
|
2.7
|
93.0
|
1.0
|
O
|
B:GLY523
|
2.7
|
83.6
|
1.0
|
OE2
|
B:GLU525
|
2.8
|
84.6
|
1.0
|
CD
|
B:GLU525
|
3.8
|
84.6
|
1.0
|
C
|
B:GLU591
|
3.9
|
93.0
|
1.0
|
C
|
B:GLY523
|
3.9
|
83.6
|
1.0
|
O
|
B:ARG503
|
4.0
|
80.2
|
1.0
|
OE1
|
B:GLU525
|
4.4
|
84.6
|
1.0
|
CA
|
B:GLY523
|
4.6
|
83.6
|
1.0
|
OH
|
B:TYR527
|
4.6
|
87.4
|
1.0
|
CA
|
B:GLU591
|
4.6
|
93.0
|
1.0
|
OD2
|
B:ASP356
|
4.7
|
99.6
|
1.0
|
CG
|
B:GLU525
|
4.7
|
84.6
|
1.0
|
CB
|
B:SER592
|
4.8
|
100.2
|
1.0
|
N
|
B:SER592
|
4.9
|
100.2
|
1.0
|
OE1
|
B:GLU591
|
4.9
|
93.0
|
1.0
|
CA
|
B:SER592
|
5.0
|
100.2
|
1.0
|
CG
|
B:ASP356
|
5.0
|
99.6
|
1.0
|
N
|
B:MET524
|
5.0
|
81.4
|
1.0
|
|
Barium binding site 4 out
of 8 in 7rk6
Go back to
Barium Binding Sites List in 7rk6
Barium binding site 4 out
of 8 in the Aplysia SLO1 with Barium
Mono view
Stereo pair view
|
A full contact list of Barium with other atoms in the Ba binding
site number 4 of Aplysia SLO1 with Barium within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ba1102
b:139.2
occ:1.00
|
OD1
|
C:ASN438
|
2.7
|
76.5
|
1.0
|
O
|
B:GLN899
|
2.7
|
75.7
|
1.0
|
OD1
|
B:ASP905
|
2.7
|
96.4
|
1.0
|
O
|
B:HOH1201
|
2.7
|
89.1
|
1.0
|
O
|
B:ASP902
|
2.8
|
85.2
|
1.0
|
OD2
|
B:ASP905
|
2.8
|
96.4
|
1.0
|
ND2
|
C:ASN438
|
2.9
|
76.5
|
1.0
|
CG
|
B:ASP905
|
3.1
|
96.4
|
1.0
|
CG
|
C:ASN438
|
3.2
|
76.5
|
1.0
|
C
|
B:GLN899
|
3.8
|
75.7
|
1.0
|
C
|
B:ASP902
|
3.9
|
85.2
|
1.0
|
CA
|
B:GLN899
|
4.3
|
75.7
|
1.0
|
CB
|
B:GLN899
|
4.4
|
75.7
|
1.0
|
CA
|
B:GLN903
|
4.4
|
90.8
|
1.0
|
CB
|
B:ASP905
|
4.6
|
96.4
|
1.0
|
N
|
B:GLN903
|
4.6
|
90.8
|
1.0
|
CB
|
C:ASN438
|
4.7
|
76.5
|
1.0
|
O
|
B:GLN903
|
4.7
|
90.8
|
1.0
|
C
|
B:GLN903
|
4.8
|
90.8
|
1.0
|
N
|
B:PHE900
|
4.8
|
72.0
|
1.0
|
N
|
B:ASP906
|
4.9
|
102.4
|
1.0
|
|
Barium binding site 5 out
of 8 in 7rk6
Go back to
Barium Binding Sites List in 7rk6
Barium binding site 5 out
of 8 in the Aplysia SLO1 with Barium
Mono view
Stereo pair view
|
A full contact list of Barium with other atoms in the Ba binding
site number 5 of Aplysia SLO1 with Barium within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ba1101
b:154.3
occ:1.00
|
OE2
|
C:GLU525
|
2.7
|
84.6
|
1.0
|
O
|
C:GLY523
|
2.8
|
83.4
|
1.0
|
O
|
C:GLU591
|
2.8
|
93.0
|
1.0
|
CD
|
C:GLU525
|
3.8
|
84.6
|
1.0
|
C
|
C:GLU591
|
3.9
|
93.0
|
1.0
|
C
|
C:GLY523
|
3.9
|
83.4
|
1.0
|
O
|
C:ARG503
|
4.0
|
80.1
|
1.0
|
OE1
|
C:GLU525
|
4.4
|
84.6
|
1.0
|
CA
|
C:GLY523
|
4.6
|
83.4
|
1.0
|
OH
|
C:TYR527
|
4.6
|
87.5
|
1.0
|
CA
|
C:GLU591
|
4.6
|
93.0
|
1.0
|
OD2
|
C:ASP356
|
4.7
|
99.7
|
1.0
|
CG
|
C:GLU525
|
4.7
|
84.6
|
1.0
|
CB
|
C:SER592
|
4.8
|
100.2
|
1.0
|
N
|
C:SER592
|
4.9
|
100.2
|
1.0
|
OE1
|
C:GLU591
|
4.9
|
93.0
|
1.0
|
CA
|
C:SER592
|
5.0
|
100.2
|
1.0
|
CG
|
C:ASP356
|
5.0
|
99.7
|
1.0
|
N
|
C:MET524
|
5.0
|
81.5
|
1.0
|
|
Barium binding site 6 out
of 8 in 7rk6
Go back to
Barium Binding Sites List in 7rk6
Barium binding site 6 out
of 8 in the Aplysia SLO1 with Barium
Mono view
Stereo pair view
|
A full contact list of Barium with other atoms in the Ba binding
site number 6 of Aplysia SLO1 with Barium within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ba1102
b:139.5
occ:1.00
|
O
|
C:HOH1201
|
2.7
|
88.6
|
1.0
|
OD1
|
C:ASP905
|
2.7
|
96.2
|
1.0
|
O
|
C:GLN899
|
2.7
|
75.5
|
1.0
|
OD2
|
C:ASP905
|
2.7
|
96.2
|
1.0
|
OD1
|
D:ASN438
|
2.7
|
76.4
|
1.0
|
O
|
C:ASP902
|
2.8
|
85.1
|
1.0
|
ND2
|
D:ASN438
|
2.9
|
76.4
|
1.0
|
CG
|
C:ASP905
|
3.1
|
96.2
|
1.0
|
CG
|
D:ASN438
|
3.2
|
76.4
|
1.0
|
C
|
C:GLN899
|
3.8
|
75.5
|
1.0
|
C
|
C:ASP902
|
3.9
|
85.1
|
1.0
|
CA
|
C:GLN899
|
4.3
|
75.5
|
1.0
|
CB
|
C:GLN899
|
4.4
|
75.5
|
1.0
|
CA
|
C:GLN903
|
4.4
|
90.7
|
1.0
|
CB
|
C:ASP905
|
4.6
|
96.2
|
1.0
|
N
|
C:GLN903
|
4.6
|
90.7
|
1.0
|
CB
|
D:ASN438
|
4.7
|
76.4
|
1.0
|
O
|
C:GLN903
|
4.7
|
90.7
|
1.0
|
C
|
C:GLN903
|
4.8
|
90.7
|
1.0
|
N
|
C:PHE900
|
4.8
|
71.8
|
1.0
|
N
|
C:ASP906
|
4.9
|
102.1
|
1.0
|
|
Barium binding site 7 out
of 8 in 7rk6
Go back to
Barium Binding Sites List in 7rk6
Barium binding site 7 out
of 8 in the Aplysia SLO1 with Barium
Mono view
Stereo pair view
|
A full contact list of Barium with other atoms in the Ba binding
site number 7 of Aplysia SLO1 with Barium within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ba1101
b:156.2
occ:1.00
|
OE2
|
D:GLU525
|
2.7
|
85.0
|
1.0
|
O
|
D:GLU591
|
2.7
|
93.6
|
1.0
|
O
|
D:GLY523
|
2.8
|
83.9
|
1.0
|
CD
|
D:GLU525
|
3.8
|
85.0
|
1.0
|
C
|
D:GLU591
|
3.9
|
93.6
|
1.0
|
C
|
D:GLY523
|
3.9
|
83.9
|
1.0
|
O
|
D:ARG503
|
4.0
|
80.3
|
1.0
|
OE1
|
D:GLU525
|
4.4
|
85.0
|
1.0
|
CA
|
D:GLY523
|
4.6
|
83.9
|
1.0
|
OH
|
D:TYR527
|
4.6
|
87.8
|
1.0
|
CA
|
D:GLU591
|
4.6
|
93.6
|
1.0
|
OD2
|
D:ASP356
|
4.7
|
100.0
|
1.0
|
CG
|
D:GLU525
|
4.7
|
85.0
|
1.0
|
CB
|
D:SER592
|
4.8
|
100.7
|
1.0
|
N
|
D:SER592
|
4.9
|
100.7
|
1.0
|
OE1
|
D:GLU591
|
4.9
|
93.6
|
1.0
|
CA
|
D:SER592
|
5.0
|
100.7
|
1.0
|
CG
|
D:ASP356
|
5.0
|
100.0
|
1.0
|
N
|
D:MET524
|
5.0
|
81.9
|
1.0
|
|
Barium binding site 8 out
of 8 in 7rk6
Go back to
Barium Binding Sites List in 7rk6
Barium binding site 8 out
of 8 in the Aplysia SLO1 with Barium
Mono view
Stereo pair view
|
A full contact list of Barium with other atoms in the Ba binding
site number 8 of Aplysia SLO1 with Barium within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ba1102
b:139.8
occ:1.00
|
O
|
D:HOH1201
|
2.7
|
88.7
|
1.0
|
OD1
|
D:ASP905
|
2.7
|
96.5
|
1.0
|
O
|
D:GLN899
|
2.7
|
75.7
|
1.0
|
OD2
|
D:ASP905
|
2.7
|
96.5
|
1.0
|
O
|
D:ASP902
|
2.8
|
85.4
|
1.0
|
OD1
|
A:ASN438
|
2.8
|
76.5
|
1.0
|
ND2
|
A:ASN438
|
2.9
|
76.5
|
1.0
|
CG
|
D:ASP905
|
3.1
|
96.5
|
1.0
|
CG
|
A:ASN438
|
3.2
|
76.5
|
1.0
|
C
|
D:GLN899
|
3.8
|
75.7
|
1.0
|
C
|
D:ASP902
|
3.9
|
85.4
|
1.0
|
CA
|
D:GLN899
|
4.3
|
75.7
|
1.0
|
CB
|
D:GLN899
|
4.4
|
75.7
|
1.0
|
CA
|
D:GLN903
|
4.4
|
90.9
|
1.0
|
CB
|
D:ASP905
|
4.6
|
96.5
|
1.0
|
N
|
D:GLN903
|
4.6
|
90.9
|
1.0
|
CB
|
A:ASN438
|
4.7
|
76.5
|
1.0
|
O
|
D:GLN903
|
4.7
|
90.9
|
1.0
|
C
|
D:GLN903
|
4.8
|
90.9
|
1.0
|
N
|
D:PHE900
|
4.8
|
71.8
|
1.0
|
N
|
D:ASP906
|
4.9
|
102.3
|
1.0
|
|
Reference:
J.Zhu,
S.Srivastava,
R.Cachau,
M.Holmgren.
Cryoem Structure of Aplysia SLO1 with 0 Mm BA2+ at 2.91 A To Be Published.
Page generated: Wed Jul 10 16:08:16 2024
|