Barium in PDB 4e60: Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex

The structure of Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex, PDB code: 4e60 was solved by P.K.Mandal, S.Venkadesh, N.Gautham, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.11 / 1.86
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	35.177, 35.177, 44.341, 90.00, 90.00, 120.00
R / Rfree (%)	21.5 / 23.1

The binding sites of Barium atom in the Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex (pdb code 4e60). This binding sites where shown within 5.0 Angstroms radius around Barium atom.
In total 2 binding sites of Barium where determined in the Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex, PDB code: 4e60:
Jump to Barium binding site number: 1; 2;

Barium binding site 1 out of 2 in the Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 1 of Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex within 5.0Å range: probe atom residue distance (Å) B Occ D:Ba101 b:36.2 occ:0.70 BA D:BA101 0.0 36.2 0.7 BA D:BA101 1.9 24.0 0.3 O6 A:DG4 3.1 16.6 1.0 N7 A:DG4 3.2 18.9 1.0 C6 A:DG4 3.8 15.6 1.0 C5 A:DG4 3.9 17.4 1.0 N7 D:DG16 4.0 10.3 1.0 O6 D:DG16 4.1 16.7 1.0 C8 A:DG4 4.4 19.2 1.0 C5 D:DG16 4.7 11.5 1.0 C6 D:DG16 4.8 11.9 1.0 C8 D:DG16 4.9 9.0 1.0 O6 B:DG8 5.0 13.4 1.0 N4 B:DC9 5.0 16.4 1.0

Barium binding site 2 out of 2 in the Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 2 of Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex within 5.0Å range: probe atom residue distance (Å) B Occ D:Ba101 b:24.0 occ:0.30 BA D:BA101 0.0 24.0 0.3 BA D:BA101 1.9 36.2 0.7 O6 D:DG16 2.6 16.7 1.0 N7 D:DG16 2.9 10.3 1.0 C6 D:DG16 3.3 11.9 1.0 C5 D:DG16 3.4 11.5 1.0 C7 D:DT15 4.0 7.6 0.2 C8 D:DG16 4.0 9.0 1.0 N7 A:DG4 4.2 18.9 1.0 O6 A:DG4 4.5 16.6 1.0 O4 C:DT13 4.6 11.4 1.0 C6 D:DT15 4.6 5.7 1.0 N1 D:DG16 4.7 13.6 1.0 O5' D:DT15 4.7 12.9 1.0 C4 D:DG16 4.7 6.9 1.0 C5 D:DT15 4.7 7.3 1.0 C5' D:DT15 4.9 3.1 1.0

P.K.Mandal, S.Venkadesh, N.Gautham. Interactions of BA2+ with A Non-Self-Complementary Z-Type Dna Duplex To Be Published.