Atomistry » Barium » PDB 4x1a-5wkx » 4xk0
Atomistry »
  Barium »
    PDB 4x1a-5wkx »
      4xk0 »

Barium in PDB 4xk0: Crystal Structure of A Tetramolecular Rna G-Quadruplex in Potassium

Protein crystallography data

The structure of Crystal Structure of A Tetramolecular Rna G-Quadruplex in Potassium, PDB code: 4xk0 was solved by M.C.Chen, P.Murat, K.A.Abecassis, A.R.Ferre-D'amare, S.Balasubramanian, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.54 / 1.08
Space group P 4
Cell size a, b, c (Å), α, β, γ (°) 33.133, 33.133, 54.843, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Other elements in 4xk0:

The structure of Crystal Structure of A Tetramolecular Rna G-Quadruplex in Potassium also contains other interesting chemical elements:

Potassium (K) 9 atoms

Barium Binding Sites:

The binding sites of Barium atom in the Crystal Structure of A Tetramolecular Rna G-Quadruplex in Potassium (pdb code 4xk0). This binding sites where shown within 5.0 Angstroms radius around Barium atom.
In total 3 binding sites of Barium where determined in the Crystal Structure of A Tetramolecular Rna G-Quadruplex in Potassium, PDB code: 4xk0:
Jump to Barium binding site number: 1; 2; 3;

Barium binding site 1 out of 3 in 4xk0

Go back to Barium Binding Sites List in 4xk0
Barium binding site 1 out of 3 in the Crystal Structure of A Tetramolecular Rna G-Quadruplex in Potassium


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 1 of Crystal Structure of A Tetramolecular Rna G-Quadruplex in Potassium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ba106

b:10.0
occ:0.64
O A:HOH219 2.7 23.6 1.0
O A:HOH233 2.7 16.6 1.0
O A:HOH227 2.8 25.6 1.0
O2' A:U5 2.8 7.6 1.0
O A:HOH220 2.8 18.5 1.0
O3' A:U5 2.9 11.4 1.0
O A:HOH221 2.9 18.5 1.0
O A:HOH223 3.1 11.0 1.0
H1' A:U5 3.6 9.5 1.0
C2' A:U5 3.8 7.8 1.0
C3' A:U5 3.9 8.8 1.0
C1' A:U5 4.2 7.9 1.0
OP2 A:G4 4.3 6.8 1.0
O2 A:U5 4.4 9.1 1.0
H3' A:U5 4.4 10.6 1.0
H2' A:U5 4.6 9.3 1.0
O A:HOH216 4.7 22.1 1.0
O A:HOH232 4.9 8.4 1.0

Barium binding site 2 out of 3 in 4xk0

Go back to Barium Binding Sites List in 4xk0
Barium binding site 2 out of 3 in the Crystal Structure of A Tetramolecular Rna G-Quadruplex in Potassium


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 2 of Crystal Structure of A Tetramolecular Rna G-Quadruplex in Potassium within 5.0Å range:

Barium binding site 3 out of 3 in 4xk0

Go back to Barium Binding Sites List in 4xk0
Barium binding site 3 out of 3 in the Crystal Structure of A Tetramolecular Rna G-Quadruplex in Potassium


Mono view


Stereo pair view

A full contact list of Barium with other atoms in the Ba binding site number 3 of Crystal Structure of A Tetramolecular Rna G-Quadruplex in Potassium within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ba105

b:5.5
occ:0.86
O C:HOH206 2.7 15.4 1.0
O C:HOH221 2.7 11.7 1.0
O3' C:U2 2.8 9.5 1.0
O C:HOH219 2.8 8.4 1.0
O2' C:U2 3.0 7.7 1.0
HO2' C:U2 3.1 9.2 1.0
H1' C:U2 3.7 9.3 1.0
C2' C:U2 3.8 6.8 1.0
C3' C:U2 3.9 8.8 1.0
OP2 C:G1 4.1 6.9 1.0
C1' C:U2 4.3 7.7 1.0
H3' C:U2 4.4 10.5 1.0
H2' C:U2 4.7 8.2 1.0
O2 C:U2 4.8 7.5 1.0
OP2 C:G0 4.9 9.7 1.0
H4' C:U2 5.0 10.7 1.0
C4' C:U2 5.0 8.9 1.0

Reference:

M.C.Chen, P.Murat, K.A.Abecassis, A.R.Ferre-D'amare, S.Balasubramanian. Insights Into the Mechanism of A G-Quadruplex-Unwinding Deah-Box Helicase Nucleic Acids Res. 2015.
ISSN: ESSN 1362-4962
DOI: 10.1093/NAR/GKV051
Page generated: Wed Jul 10 15:37:02 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy